Variant report

Variant	rs4360166
Chromosome Location	chr6:121644905-121644906
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:121635999..121638850-chr6:121643981..121646181,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs4305755	0.81[AFR][1000 genomes]
rs55975505	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58754007	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73768940	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9375021	0.80[ASN][1000 genomes]
rs9490162	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9490164	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9490173	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv830789	chr6:121581450-121732320	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121586400-121655000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr6:121588400-121655200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:121589000-121654200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:121589200-121655000	Weak transcription	Fetal Stomach	stomach
5	chr6:121594200-121654800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:121604000-121645200	Weak transcription	Fetal Kidney	kidney
7	chr6:121604800-121653000	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr6:121606600-121655000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr6:121611200-121655000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:121615600-121655000	Weak transcription	Pancreas	Pancrea
11	chr6:121616200-121655000	Weak transcription	Fetal Muscle Leg	muscle
12	chr6:121617200-121651600	Weak transcription	GM12878-XiMat	blood
13	chr6:121622200-121654600	Weak transcription	Fetal Thymus	thymus
14	chr6:121622600-121655000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:121622800-121654800	Weak transcription	Brain Germinal Matrix	brain
16	chr6:121629800-121648400	Weak transcription	Brain Substantia Nigra	brain
17	chr6:121630600-121651600	Weak transcription	K562	blood
18	chr6:121632000-121654200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:121632200-121653800	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr6:121632200-121654200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr6:121632200-121655000	Weak transcription	HSMM	muscle
22	chr6:121632400-121649800	Weak transcription	NHLF	lung
23	chr6:121632400-121654600	Weak transcription	HMEC	breast
24	chr6:121632800-121655000	Weak transcription	Lung	lung
25	chr6:121634600-121654800	Weak transcription	Fetal Brain Male	brain
26	chr6:121635000-121653800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr6:121635200-121655200	Weak transcription	Aorta	Aorta
28	chr6:121636000-121654800	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr6:121636200-121645200	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr6:121636200-121654200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr6:121636600-121655000	Weak transcription	Esophagus	oesophagus
32	chr6:121636800-121654800	Weak transcription	Placenta	Placenta
33	chr6:121637000-121655000	Weak transcription	Fetal Intestine Small	intestine
34	chr6:121637200-121654000	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr6:121637200-121655000	Weak transcription	Liver	Liver
36	chr6:121637600-121651400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr6:121638200-121651600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr6:121638200-121655200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:121638400-121654400	Weak transcription	Primary B cells from peripheral blood	blood
40	chr6:121638800-121654400	Weak transcription	Primary T cells from cord blood	blood
41	chr6:121639600-121651400	Weak transcription	Dnd41	blood
42	chr6:121639600-121654400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr6:121640600-121645600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr6:121640600-121654200	Weak transcription	Brain Cingulate Gyrus	brain
45	chr6:121640600-121654200	Weak transcription	Fetal Intestine Large	intestine
46	chr6:121640600-121654800	Weak transcription	Brain Angular Gyrus	brain
47	chr6:121640600-121655200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr6:121640600-121655200	Weak transcription	Adipose Nuclei	Adipose
49	chr6:121640600-121655200	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr6:121640600-121655200	Weak transcription	NH-A	brain

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