Variant report

Variant	rs9490162
Chromosome Location	chr6:121655392-121655393
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs4360166	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs55975505	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58754007	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73768940	0.88[ASN][1000 genomes]
rs9375021	0.81[ASN][1000 genomes]
rs9490164	0.92[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9490173	0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv830789	chr6:121581450-121732320	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121640600-121655400	Weak transcription	Fetal Heart	heart
2	chr6:121651600-121656200	Active TSS	K562	blood
3	chr6:121653400-121656600	Active TSS	GM12878-XiMat	blood
4	chr6:121653800-121655400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr6:121654400-121657000	Active TSS	Duodenum Mucosa	Duodenum
6	chr6:121654600-121655400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
7	chr6:121654600-121656200	Active TSS	Hela-S3	cervix
8	chr6:121654600-121656800	Active TSS	Rectal Mucosa Donor 29	rectum
9	chr6:121654600-121656800	Active TSS	A549	lung
10	chr6:121654800-121655400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:121654800-121655600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
12	chr6:121654800-121656400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:121654800-121656800	Active TSS	Rectal Mucosa Donor 31	rectum
14	chr6:121655000-121655400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:121655000-121655400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:121655000-121655400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
17	chr6:121655000-121655400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:121655000-121655400	Enhancers	Esophagus	oesophagus
19	chr6:121655000-121655400	Enhancers	Left Ventricle	heart
20	chr6:121655000-121655400	Enhancers	Lung	lung
21	chr6:121655000-121655400	Enhancers	Pancreas	Pancrea
22	chr6:121655000-121655400	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr6:121655000-121655400	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr6:121655000-121655400	Weak transcription	Spleen	Spleen
25	chr6:121655000-121655600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
26	chr6:121655000-121655600	Flanking Active TSS	Primary hematopoietic stem cells	blood
27	chr6:121655000-121655600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
28	chr6:121655000-121655600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:121655000-121655800	Active TSS	Primary T regulatory cells fromperipheralblood	blood
30	chr6:121655000-121656200	Active TSS	iPS-15b Cell Line	embryonic stem cell
31	chr6:121655000-121656200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr6:121655000-121656200	Active TSS	Primary T cells from cord blood	blood
33	chr6:121655000-121656200	Active TSS	Muscle Satellite Cultured Cells	--
34	chr6:121655000-121656200	Active TSS	Skeletal Muscle Female	skeletal muscle
35	chr6:121655000-121656200	Active TSS	NHEK	skin
36	chr6:121655000-121656400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr6:121655000-121656400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr6:121655000-121656400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr6:121655000-121656400	Active TSS	Brain Anterior Caudate	brain
40	chr6:121655000-121656400	Active TSS	Placenta	Placenta
41	chr6:121655000-121656400	Active TSS	Fetal Stomach	stomach
42	chr6:121655000-121656400	Active TSS	HSMM	muscle
43	chr6:121655000-121656600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
44	chr6:121655000-121656600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr6:121655000-121656600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr6:121655000-121656600	Active TSS	Psoas Muscle	Psoas
47	chr6:121655000-121656800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr6:121655000-121656800	Active TSS	Colonic Mucosa	Colon
49	chr6:121655200-121655400	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr6:121655200-121655400	Flanking Active TSS	Primary B cells from cord blood	blood

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