Variant report

Variant	rs4360702
Chromosome Location	chr11:63233363-63233364
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11231498	0.99[ASN][1000 genomes]
rs11231499	0.97[ASN][1000 genomes]
rs1305	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.81[MEX][hapmap];0.96[ASN][1000 genomes]
rs2275999	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];1.00[ASN][1000 genomes]
rs2282480	0.99[ASN][1000 genomes]
rs2298410	0.95[ASN][1000 genomes]
rs61929667	0.86[ASN][1000 genomes]
rs9633996	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	esv1822068	chr11:63146055-63239984	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv468588	chr11:63233363-63320239	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv555179	chr11:63233363-63320239	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs4360702	POLR2G	cis	cerebellum	SCAN
rs4360702	TAF6L	cis	cerebellum	SCAN
rs4360702	CHRM1	cis	parietal	SCAN
rs4360702	DPP3	cis	parietal	SCAN
rs4360702	SLC22A8	cis	cerebellum	SCAN
rs4360702	MTA2	cis	parietal	SCAN
rs4360702	SLC22A6	cis	cerebellum	SCAN
rs4360702	OSBP	cis	parietal	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63227600-63246200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:63227800-63233800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr11:63227800-63252600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:63228000-63234200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr11:63228000-63237800	Weak transcription	Brain Hippocampus Middle	brain
6	chr11:63228200-63235400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr11:63228400-63238000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr11:63228800-63234800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:63229000-63233400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr11:63229000-63236000	Strong transcription	Adipose Nuclei	Adipose
11	chr11:63229400-63234200	Strong transcription	H1 Cell Line	embryonic stem cell
12	chr11:63229600-63233600	Weak transcription	Brain Substantia Nigra	brain
13	chr11:63231000-63235200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr11:63231200-63246200	Weak transcription	Colon Smooth Muscle	Colon
15	chr11:63231600-63247400	Weak transcription	Pancreas	Pancrea
16	chr11:63232400-63233400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr11:63232400-63233600	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr11:63232800-63235000	Strong transcription	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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