Variant report

Variant	rs2298410
Chromosome Location	chr11:63229471-63229472
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11231454	0.91[EUR][1000 genomes]
rs11231457	1.00[EUR][1000 genomes]
rs11231498	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11231499	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11824964	0.80[AMR][1000 genomes]
rs12286792	0.82[AMR][1000 genomes]
rs1305	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2154751	0.82[EUR][1000 genomes]
rs2275999	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];1.00[MEX][hapmap];0.95[ASN][1000 genomes]
rs2282480	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4360702	0.95[ASN][1000 genomes]
rs4553371	0.96[EUR][1000 genomes]
rs61929667	0.83[ASN][1000 genomes]
rs7104584	1.00[EUR][1000 genomes]
rs947808	0.84[EUR][1000 genomes]
rs9633996	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	esv1822068	chr11:63146055-63239984	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63227600-63231800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:63227600-63246200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:63227800-63231400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr11:63227800-63233800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr11:63227800-63252600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:63228000-63230400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr11:63228000-63234200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr11:63228000-63237800	Weak transcription	Brain Hippocampus Middle	brain
9	chr11:63228200-63230600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr11:63228200-63235400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr11:63228400-63230000	Weak transcription	Colon Smooth Muscle	Colon
12	chr11:63228400-63231000	Weak transcription	Pancreas	Pancrea
13	chr11:63228400-63238000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr11:63228600-63230400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr11:63228800-63234800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr11:63229000-63230800	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr11:63229000-63233400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr11:63229000-63236000	Strong transcription	Adipose Nuclei	Adipose
19	chr11:63229400-63234200	Strong transcription	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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