Variant report

Variant	rs11231454
Chromosome Location	chr11:63170735-63170736
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:63168551..63171520-chr3:13164041..13166803,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10501393	0.83[ASN][1000 genomes]
rs10897412	0.87[ASN][1000 genomes]
rs11231450	0.87[ASN][1000 genomes]
rs11231453	0.97[ASN][1000 genomes]
rs11231455	0.90[ASN][1000 genomes]
rs11231457	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11231463	0.83[ASN][1000 genomes]
rs11231465	0.83[ASN][1000 genomes]
rs11231498	0.83[EUR][1000 genomes]
rs11231499	0.83[EUR][1000 genomes]
rs11821194	0.83[EUR][1000 genomes]
rs11821807	0.83[EUR][1000 genomes]
rs1305	0.85[CEU][hapmap]
rs2154751	0.91[EUR][1000 genomes]
rs2275999	0.85[CEU][hapmap]
rs2282480	0.89[EUR][1000 genomes]
rs2298410	0.91[EUR][1000 genomes]
rs4553371	0.87[EUR][1000 genomes]
rs541583	0.83[ASN][1000 genomes]
rs7104584	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9633996	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv1053585	chr11:63057767-63180308	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv555178	chr11:63078742-63197930	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1822068	chr11:63146055-63239984	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1053627	chr11:63160057-63183395	Flanking Active TSS Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3434037	chr11:63170556-63217699	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63165200-63171400	Weak transcription	HepG2	liver
2	chr11:63168400-63171400	Weak transcription	Liver	Liver
3	chr11:63170600-63172800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr11:63170600-63173800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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