Variant report

Variant	rs10501393
Chromosome Location	chr11:63216375-63216376
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11231454	0.83[ASN][1000 genomes]
rs11231455	0.92[ASN][1000 genomes]
rs11231461	0.93[ASN][1000 genomes]
rs11231463	1.00[ASN][1000 genomes]
rs11231465	1.00[ASN][1000 genomes]
rs17158337	0.88[AFR][1000 genomes]
rs17158380	1.00[CEU][hapmap]
rs2282479	1.00[CHB][hapmap];0.92[GIH][hapmap]
rs541583	1.00[ASN][1000 genomes]
rs67952179	0.95[AFR][1000 genomes]
rs7944411	1.00[CEU][hapmap]
rs940611	1.00[CEU][hapmap]
rs9971506	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	esv1822068	chr11:63146055-63239984	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv3434037	chr11:63170556-63217699	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63215000-63216800	Enhancers	H9 Cell Line	embryonic stem cell
2	chr11:63215000-63217000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
3	chr11:63215400-63217400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:63215600-63216400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:63215600-63216800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr11:63215600-63216800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:63215600-63217000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr11:63215600-63217400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr11:63215800-63216800	Enhancers	Brain Hippocampus Middle	brain
10	chr11:63215800-63217000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr11:63216000-63216600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
12	chr11:63216000-63216800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr11:63216000-63216800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr11:63216200-63216400	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr11:63216200-63216800	Enhancers	Brain Cingulate Gyrus	brain
16	chr11:63216200-63217000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr11:63216200-63217000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links