Variant report

Variant	rs940611
Chromosome Location	chr11:63256441-63256442
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11823214	0.89[ASN][1000 genomes]
rs12280687	0.95[ASN][1000 genomes]
rs12287410	0.93[ASN][1000 genomes]
rs17158380	1.00[CEU][hapmap]
rs2507928	0.95[ASN][1000 genomes]
rs2732326	0.95[ASN][1000 genomes]
rs2849654	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61929696	0.82[EUR][1000 genomes]
rs61929697	0.82[EUR][1000 genomes]
rs7932642	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7935716	0.97[ASN][1000 genomes]
rs7944411	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9971506	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468588	chr11:63233363-63320239	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv555179	chr11:63233363-63320239	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv972926	chr11:63235663-63258845	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	esv3364622	chr11:63247425-63274716	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63254000-63256800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr11:63254200-63256800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr11:63255200-63256600	Enhancers	Adipose Nuclei	Adipose
4	chr11:63255600-63256800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:63255800-63257000	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr11:63255800-63257200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
7	chr11:63255800-63257600	Enhancers	Brain Hippocampus Middle	brain
8	chr11:63255800-63257600	Enhancers	Brain Substantia Nigra	brain
9	chr11:63256000-63256800	Enhancers	Colon Smooth Muscle	Colon
10	chr11:63256000-63257400	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr11:63256000-63257800	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr11:63256200-63256600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:63256200-63257200	Weak transcription	HSMMtube	muscle
14	chr11:63256200-63257600	Enhancers	Brain Cingulate Gyrus	brain
15	chr11:63256200-63257600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr11:63256400-63257000	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr11:63256400-63257000	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr11:63256400-63257200	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr11:63256400-63257600	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr11:63256400-63257600	Weak transcription	Brain Angular Gyrus	brain

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