Variant report

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr11:63262379-63262716	T-47D	breast:	n/a	n/a

No data

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No.	Distal block	Cell Line	Cell type
1	chr11:63261771..63264727-chr11:63266534..63268042,2	K562	blood:
2	chr11:63261771..63264925-chr11:63266534..63269379,3	K562	blood:
3	chr11:63261433..63263398-chr11:63402770..63405522,2	K562	blood:

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No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LGALS12-2	chr11:63262153-63263067	XLOC_009152

No data

Variant related genes	Relation type
HRASLS5	TF binding region
ENSG00000256789	Chromatin interaction

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11823214	0.89[ASN][1000 genomes]
rs12280687	0.95[ASN][1000 genomes]
rs12287410	0.93[ASN][1000 genomes]
rs12419465	0.82[EUR][1000 genomes]
rs17158380	1.00[CEU][hapmap];0.87[TSI][hapmap]
rs17728785	0.82[EUR][1000 genomes]
rs2507928	0.95[ASN][1000 genomes]
rs2732326	0.95[ASN][1000 genomes]
rs2849652	0.82[EUR][1000 genomes]
rs2849654	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7932642	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7935716	0.97[ASN][1000 genomes]
rs7944411	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.95[ASN][1000 genomes]
rs940611	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468588	chr11:63233363-63320239	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv555179	chr11:63233363-63320239	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv3364622	chr11:63247425-63274716	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63259400-63262800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr11:63259800-63265000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:63261400-63263200	Enhancers	Liver	Liver
4	chr11:63261600-63263400	Enhancers	Adipose Nuclei	Adipose
5	chr11:63262200-63263200	Enhancers	Gastric	stomach
6	chr11:63262200-63263200	Enhancers	Pancreas	Pancrea
7	chr11:63262200-63263400	Enhancers	Stomach Smooth Muscle	stomach
8	chr11:63262200-63263600	Enhancers	Fetal Muscle Leg	muscle
9	chr11:63262600-63263000	Enhancers	Colon Smooth Muscle	Colon
10	chr11:63262600-63263000	Bivalent Enhancer	HSMM	muscle

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