Variant report

Variant	rs17728785
Chromosome Location	chr11:63259559-63259560
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:20)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:20 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr11:63259028-63259638	HepG2	liver:	n/a	n/a
2	EP300	chr11:63259034-63259618	HepG2	liver:	n/a	n/a
3	TEAD4	chr11:63259068-63259598	HepG2	liver:	n/a	n/a
4	FOXA1	chr11:63259120-63259617	HepG2	liver:	n/a	n/a
5	CEBPB	chr11:63259152-63259565	HepG2	liver:	n/a	n/a
6	HDAC2	chr11:63259092-63259581	HepG2	liver:	n/a	n/a
7	FOXA2	chr11:63259160-63259575	HepG2	liver:	n/a	n/a
8	GATA1	chr11:63258766-63259831	K562	blood:	n/a	n/a
9	ATF1	chr11:63259130-63259563	K562	blood:	n/a	n/a
10	MYC	chr11:63259072-63259823	NB4	blood:	n/a	n/a
11	TAL1	chr11:63259135-63259657	K562	blood:	n/a	n/a
12	FOXA1	chr11:63259082-63259579	HepG2	liver:	n/a	n/a
13	MYBL2	chr11:63259052-63259613	HepG2	liver:	n/a	n/a
14	TEAD4	chr11:63258966-63259695	K562	blood:	n/a	n/a
15	GATA2	chr11:63259183-63259624	K562	blood:	n/a	n/a
16	CEBPD	chr11:63259049-63259615	K562	blood:	n/a	n/a
17	GATA1	chr11:63257469-63259689	PBDE	blood:	n/a	n/a
18	GATA2	chr11:63259058-63259568	K562	blood:	n/a	n/a
19	TCF7L2	chr11:63259024-63259673	HepG2	liver:	n/a	n/a
20	FOXA1	chr11:63259077-63259607	HepG2	liver:	n/a	n/a

No data

Variant related genes	Relation type
HRASLS5	TF binding region

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12419465	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17158357	0.82[EUR][1000 genomes]
rs17158378	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17158380	0.93[EUR][1000 genomes]
rs2849652	1.00[EUR][1000 genomes]
rs57210597	0.86[EUR][1000 genomes]
rs61929669	0.82[EUR][1000 genomes]
rs61929693	0.86[EUR][1000 genomes]
rs61929695	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61929696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61929697	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7115686	0.86[EUR][1000 genomes]
rs7123815	0.89[EUR][1000 genomes]
rs72930139	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9971506	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468588	chr11:63233363-63320239	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv555179	chr11:63233363-63320239	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv3364622	chr11:63247425-63274716	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63257400-63259800	Flanking Active TSS	Adipose Nuclei	Adipose
2	chr11:63257600-63259600	Active TSS	H9 Cell Line	embryonic stem cell
3	chr11:63258000-63259600	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr11:63258000-63259600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
5	chr11:63258000-63259800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:63258000-63260800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:63258200-63259600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr11:63258200-63259600	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
9	chr11:63258200-63259800	Active TSS	H1 Cell Line	embryonic stem cell
10	chr11:63258200-63260000	Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr11:63258600-63259600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr11:63258800-63259600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr11:63258800-63259600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr11:63258800-63259600	Enhancers	Stomach Mucosa	stomach
15	chr11:63258800-63259800	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
16	chr11:63258800-63259800	Enhancers	K562	blood
17	chr11:63259000-63259600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
18	chr11:63259000-63259600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
19	chr11:63259000-63259600	Bivalent Enhancer	Small Intestine	intestine
20	chr11:63259000-63259800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr11:63259000-63259800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
22	chr11:63259000-63259800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
23	chr11:63259000-63262200	Weak transcription	Pancreas	Pancrea
24	chr11:63259200-63259600	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr11:63259200-63259600	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr11:63259200-63259600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr11:63259200-63259600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr11:63259200-63259600	Enhancers	Liver	Liver
29	chr11:63259200-63259600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
30	chr11:63259200-63259600	Enhancers	Duodenum Mucosa	Duodenum
31	chr11:63259200-63259600	Enhancers	Fetal Stomach	stomach
32	chr11:63259200-63259600	Enhancers	Right Ventricle	heart
33	chr11:63259200-63259600	Flanking Active TSS	Stomach Smooth Muscle	stomach
34	chr11:63259200-63259800	Enhancers	Primary neutrophils fromperipheralblood	blood
35	chr11:63259200-63259800	Enhancers	Fetal Intestine Large	intestine
36	chr11:63259200-63259800	Enhancers	Placenta Amnion	Placenta Amnion
37	chr11:63259200-63260000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
38	chr11:63259200-63260000	Enhancers	Placenta	Placenta
39	chr11:63259200-63260200	Enhancers	HepG2	liver
40	chr11:63259200-63262200	Weak transcription	Gastric	stomach
41	chr11:63259400-63259600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
42	chr11:63259400-63259600	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
43	chr11:63259400-63259600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
44	chr11:63259400-63259600	Enhancers	Brain Anterior Caudate	brain
45	chr11:63259400-63259600	Enhancers	Brain Cingulate Gyrus	brain
46	chr11:63259400-63259600	Active TSS	Duodenum Smooth Muscle	Duodenum
47	chr11:63259400-63259800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr11:63259400-63259800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
49	chr11:63259400-63259800	Enhancers	Breast Myoepithelial Primary Cells	Breast
50	chr11:63259400-63259800	Enhancers	Fetal Intestine Small	intestine

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