Variant report

Variant	rs61929669
Chromosome Location	chr11:63228383-63228384
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:63226050..63231837-chr11:63232344..63235884,6	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10466691	1.00[AMR][1000 genomes]
rs10466692	1.00[AMR][1000 genomes]
rs11231459	1.00[AMR][1000 genomes]
rs11231460	1.00[AMR][1000 genomes]
rs11231464	0.81[AMR][1000 genomes]
rs11501493	1.00[AMR][1000 genomes]
rs12272694	1.00[AMR][1000 genomes]
rs12282281	1.00[AMR][1000 genomes]
rs12288592	1.00[AMR][1000 genomes]
rs12290345	0.81[AMR][1000 genomes]
rs12419465	0.82[EUR][1000 genomes]
rs17158280	1.00[AMR][1000 genomes]
rs17158337	0.89[EUR][1000 genomes]
rs17158357	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17158378	0.92[EUR][1000 genomes]
rs17158380	0.89[EUR][1000 genomes]
rs17728785	0.82[EUR][1000 genomes]
rs28437742	1.00[AMR][1000 genomes]
rs2849652	0.82[EUR][1000 genomes]
rs55823811	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56207718	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57210597	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58687967	1.00[AMR][1000 genomes]
rs60320069	1.00[AMR][1000 genomes]
rs60911257	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61928011	0.90[AMR][1000 genomes]
rs61928015	1.00[AMR][1000 genomes]
rs61928017	1.00[AMR][1000 genomes]
rs61928018	1.00[AMR][1000 genomes]
rs61928019	1.00[AMR][1000 genomes]
rs61928043	1.00[AMR][1000 genomes]
rs61928044	1.00[AMR][1000 genomes]
rs61928046	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61928056	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61928058	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61928059	0.89[EUR][1000 genomes]
rs61929661	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61929666	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61929668	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61929693	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61929695	0.89[EUR][1000 genomes]
rs61929696	0.86[EUR][1000 genomes]
rs61929697	0.86[EUR][1000 genomes]
rs66811727	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67952179	0.89[EUR][1000 genomes]
rs7115686	0.96[EUR][1000 genomes]
rs7123815	0.92[EUR][1000 genomes]
rs72928251	1.00[AMR][1000 genomes]
rs72928254	1.00[AMR][1000 genomes]
rs72930139	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	esv1822068	chr11:63146055-63239984	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63227200-63228400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
2	chr11:63227400-63228400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:63227400-63229000	Weak transcription	Adipose Nuclei	Adipose
4	chr11:63227600-63228400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:63227600-63229400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr11:63227600-63231800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:63227600-63246200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:63227800-63231400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr11:63227800-63233800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr11:63227800-63252600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:63228000-63230400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr11:63228000-63234200	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr11:63228000-63237800	Weak transcription	Brain Hippocampus Middle	brain
14	chr11:63228200-63229000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr11:63228200-63230600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr11:63228200-63235400	Weak transcription	Brain Cingulate Gyrus	brain

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