Variant report

Variant	rs17158280
Chromosome Location	chr11:63183831-63183832
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10466691	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10466692	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11231459	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11231460	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11231464	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11501493	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12272694	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12282281	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12288190	0.89[EUR][1000 genomes]
rs12288592	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12290345	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17158357	1.00[AMR][1000 genomes]
rs17158380	0.90[CEU][hapmap];1.00[MEX][hapmap]
rs28437742	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55823811	1.00[AMR][1000 genomes]
rs56207718	1.00[AMR][1000 genomes]
rs57210597	0.81[AMR][1000 genomes]
rs58687967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60320069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60911257	0.81[AMR][1000 genomes]
rs61928011	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61928013	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61928014	0.89[EUR][1000 genomes]
rs61928015	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61928017	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61928018	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61928019	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61928043	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61928044	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61928046	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61928056	1.00[AMR][1000 genomes]
rs61928058	0.81[AMR][1000 genomes]
rs61929661	1.00[AMR][1000 genomes]
rs61929666	0.90[AMR][1000 genomes]
rs61929668	1.00[AMR][1000 genomes]
rs61929669	1.00[AMR][1000 genomes]
rs61929693	1.00[AMR][1000 genomes]
rs66811727	0.81[AMR][1000 genomes]
rs72928251	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72928254	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7944411	0.90[CEU][hapmap]
rs940611	0.90[CEU][hapmap]
rs9971506	0.90[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv555178	chr11:63078742-63197930	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv1822068	chr11:63146055-63239984	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv3434037	chr11:63170556-63217699	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63182000-63185800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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