Variant report

Variant	rs12290345
Chromosome Location	chr11:63166931-63166932
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10466691	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10466692	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11231459	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11231460	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11231464	0.89[EUR][1000 genomes]
rs11501493	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12272694	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12282281	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12288190	0.86[EUR][1000 genomes]
rs12288592	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17158280	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17158357	0.81[AMR][1000 genomes]
rs28437742	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55823811	0.81[AMR][1000 genomes]
rs56207718	0.81[AMR][1000 genomes]
rs58687967	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60320069	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61928011	0.86[EUR][1000 genomes]
rs61928013	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61928014	0.86[EUR][1000 genomes]
rs61928015	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61928017	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61928018	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61928019	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61928043	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61928044	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61928046	0.81[AMR][1000 genomes]
rs61928056	0.81[AMR][1000 genomes]
rs61929661	0.81[AMR][1000 genomes]
rs61929668	0.81[AMR][1000 genomes]
rs61929669	0.81[AMR][1000 genomes]
rs61929693	0.81[AMR][1000 genomes]
rs72928251	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72928254	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv1053585	chr11:63057767-63180308	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv555178	chr11:63078742-63197930	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1822068	chr11:63146055-63239984	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1053627	chr11:63160057-63183395	Flanking Active TSS Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63165200-63171400	Weak transcription	HepG2	liver
2	chr11:63166200-63168000	Weak transcription	Liver	Liver

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