Variant report

Variant	rs28437742
Chromosome Location	chr11:63172873-63172874
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10466691	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10466692	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11231459	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11231460	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11231464	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11501493	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12272694	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12282281	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12288190	0.93[EUR][1000 genomes]
rs12288592	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12290345	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17158280	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17158357	1.00[AMR][1000 genomes]
rs55823811	1.00[AMR][1000 genomes]
rs56207718	1.00[AMR][1000 genomes]
rs57210597	0.81[AMR][1000 genomes]
rs58687967	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60320069	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60911257	0.81[AMR][1000 genomes]
rs61928011	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61928013	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs61928014	0.93[EUR][1000 genomes]
rs61928015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61928017	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61928018	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61928019	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61928043	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61928044	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61928046	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61928056	1.00[AMR][1000 genomes]
rs61928058	0.81[AMR][1000 genomes]
rs61929661	1.00[AMR][1000 genomes]
rs61929666	0.90[AMR][1000 genomes]
rs61929668	1.00[AMR][1000 genomes]
rs61929669	1.00[AMR][1000 genomes]
rs61929693	1.00[AMR][1000 genomes]
rs66811727	0.81[AMR][1000 genomes]
rs72928251	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72928254	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv1053585	chr11:63057767-63180308	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv555178	chr11:63078742-63197930	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1822068	chr11:63146055-63239984	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1053627	chr11:63160057-63183395	Flanking Active TSS Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3434037	chr11:63170556-63217699	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63170600-63173800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr11:63171400-63173200	Enhancers	HepG2	liver
3	chr11:63171600-63173000	Enhancers	Adipose Nuclei	Adipose
4	chr11:63172400-63173200	Enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links