Variant report

Variant	rs61928046
Chromosome Location	chrX:76267333-76267334
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10466691	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10466692	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11231459	1.00[AMR][1000 genomes]
rs11231460	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11231464	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11501493	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12272694	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12282281	1.00[AMR][1000 genomes]
rs12288592	1.00[AMR][1000 genomes]
rs12290345	0.81[AMR][1000 genomes]
rs17158280	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17158337	0.92[EUR][1000 genomes]
rs17158357	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28437742	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55823811	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56207718	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57210597	0.81[AMR][1000 genomes]
rs58687967	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60320069	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60911257	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61928011	0.90[AMR][1000 genomes]
rs61928015	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61928017	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61928018	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61928019	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61928043	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61928044	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61928056	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61928058	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61928059	0.92[EUR][1000 genomes]
rs61929661	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61929666	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61929668	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61929669	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61929693	1.00[AMR][1000 genomes]
rs66811727	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67952179	0.92[EUR][1000 genomes]
rs72928251	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72928254	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830377	chrX:75525310-76337197	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv498037	chrX:75586665-76291236	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	esv3422093	chrX:76231286-76268284	Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv3434014	chrX:76231311-76402097	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:76265800-76267400	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chrX:76265800-76267600	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chrX:76266000-76267400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chrX:76266200-76267400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
5	chrX:76266200-76267400	Active TSS	H9 Cell Line	embryonic stem cell
6	chrX:76266200-76267400	Active TSS	HUES64 Cell Line	embryonic stem cell
7	chrX:76266200-76267400	Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chrX:76266200-76267600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chrX:76266400-76267400	Active TSS	HUES48 Cell Line	embryonic stem cell
10	chrX:76266400-76267600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
11	chrX:76267000-76267400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chrX:76267200-76267400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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