Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:63213892..63215985-chr11:63230796..63232451,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11501493	0.81[EUR][1000 genomes]
rs17158337	1.00[EUR][1000 genomes]
rs17158357	0.89[EUR][1000 genomes]
rs17158378	0.81[EUR][1000 genomes]
rs55823811	1.00[EUR][1000 genomes]
rs56207718	1.00[EUR][1000 genomes]
rs57210597	0.85[EUR][1000 genomes]
rs60911257	0.96[EUR][1000 genomes]
rs61928046	0.92[EUR][1000 genomes]
rs61928056	1.00[EUR][1000 genomes]
rs61928058	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61929661	1.00[EUR][1000 genomes]
rs61929666	0.92[EUR][1000 genomes]
rs61929668	0.92[EUR][1000 genomes]
rs61929669	0.89[EUR][1000 genomes]
rs61929693	0.85[EUR][1000 genomes]
rs66811727	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67952179	1.00[EUR][1000 genomes]
rs7115686	0.85[EUR][1000 genomes]
rs7123815	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	esv1822068	chr11:63146055-63239984	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv3434037	chr11:63170556-63217699	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63214000-63215400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell

Quick Search: