Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:63246560..63248292-chr11:63401337..63403155,2	MCF-7	breast:
2	chr11:63245874..63248536-chr11:63579401..63582069,2	K562	blood:

Variant related genes	Relation type
ENSG00000168005	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12419465	0.93[EUR][1000 genomes]
rs17158357	0.89[EUR][1000 genomes]
rs17158378	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17728785	0.93[EUR][1000 genomes]
rs2849652	0.93[EUR][1000 genomes]
rs2849654	0.82[EUR][1000 genomes]
rs57210597	0.93[EUR][1000 genomes]
rs60911257	0.82[EUR][1000 genomes]
rs61929668	0.85[EUR][1000 genomes]
rs61929669	0.89[EUR][1000 genomes]
rs61929693	0.93[EUR][1000 genomes]
rs61929695	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61929696	0.96[EUR][1000 genomes]
rs61929697	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7115686	0.93[EUR][1000 genomes]
rs7123815	0.96[EUR][1000 genomes]
rs72930139	1.00[EUR][1000 genomes]
rs7932642	0.82[EUR][1000 genomes]
rs7944411	1.00[CEU][hapmap]
rs940611	1.00[CEU][hapmap]
rs9971506	1.00[CEU][hapmap];0.87[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468588	chr11:63233363-63320239	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv555179	chr11:63233363-63320239	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv972926	chr11:63235663-63258845	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63227800-63252600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:63231600-63247400	Weak transcription	Pancreas	Pancrea
3	chr11:63245000-63252800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr11:63246000-63247600	Enhancers	Adipose Nuclei	Adipose
5	chr11:63246200-63247600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:63246200-63247800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr11:63246200-63247800	Enhancers	Brain Anterior Caudate	brain
8	chr11:63246200-63247800	Enhancers	Brain Hippocampus Middle	brain
9	chr11:63246200-63247800	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr11:63246200-63247800	Enhancers	Brain Substantia Nigra	brain
11	chr11:63246600-63247800	Enhancers	K562	blood
12	chr11:63246800-63247600	Enhancers	Brain Angular Gyrus	brain
13	chr11:63246800-63247800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr11:63246800-63248600	Weak transcription	Stomach Mucosa	stomach
15	chr11:63246800-63249400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr11:63246800-63249600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr11:63246800-63249800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr11:63247000-63247400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr11:63247000-63248000	Weak transcription	A549	lung
20	chr11:63247000-63250000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr11:63247200-63247800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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