Variant report

Variant	rs61929695
Chromosome Location	chr11:63246058-63246059
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:63246009..63246898-chr11:63360308..63361267,3	MCF-7	breast:
2	chr11:63245928..63246430-chr11:63400726..63401293,2	K562	blood:
3	chr11:63245968..63246964-chr11:63402996..63404023,13	K562	blood:
4	chr11:63245937..63247024-chr11:63402984..63404381,12	MCF-7	breast:
5	chr11:63233736..63234296-chr11:63246013..63246557,2	MCF-7	breast:
6	chr11:62802826..62803401-chr11:63245985..63246532,2	MCF-7	breast:
7	chr11:63246034..63246989-chr11:63275220..63276171,6	MCF-7	breast:
8	chr11:63232938..63235423-chr11:63245468..63246970,2	K562	blood:
9	chr11:63245874..63248536-chr11:63579401..63582069,2	K562	blood:
10	chr11:63245980..63247020-chr11:63274863..63275704,3	MCF-7	breast:
11	chr11:63246035..63246923-chr11:63373745..63374642,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12419465	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17158357	0.89[EUR][1000 genomes]
rs17158378	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17158380	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17728785	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2849652	0.93[EUR][1000 genomes]
rs2849654	0.82[EUR][1000 genomes]
rs57210597	0.93[EUR][1000 genomes]
rs60911257	0.82[EUR][1000 genomes]
rs61929668	0.85[EUR][1000 genomes]
rs61929669	0.89[EUR][1000 genomes]
rs61929693	0.93[EUR][1000 genomes]
rs61929696	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61929697	0.96[EUR][1000 genomes]
rs7115686	0.93[EUR][1000 genomes]
rs7123815	0.96[EUR][1000 genomes]
rs72930139	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7932642	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468588	chr11:63233363-63320239	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv555179	chr11:63233363-63320239	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv972926	chr11:63235663-63258845	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63227600-63246200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:63227800-63252600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:63231200-63246200	Weak transcription	Colon Smooth Muscle	Colon
4	chr11:63231600-63247400	Weak transcription	Pancreas	Pancrea
5	chr11:63244400-63246200	Weak transcription	Brain Hippocampus Middle	brain
6	chr11:63244800-63246200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:63245000-63246200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr11:63245000-63252800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:63245400-63246200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr11:63245400-63246200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr11:63245800-63246200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr11:63246000-63246200	Genic enhancers	H9 Cell Line	embryonic stem cell
13	chr11:63246000-63247000	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr11:63246000-63247600	Enhancers	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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