Variant report

Variant	rs11231465
Chromosome Location	chr11:63186296-63186297
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10501393	1.00[ASN][1000 genomes]
rs10897412	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11231450	0.84[AMR][1000 genomes]
rs11231453	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11231454	0.83[ASN][1000 genomes]
rs11231455	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11231461	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11231463	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231495	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2282479	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs541583	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv555178	chr11:63078742-63197930	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv1822068	chr11:63146055-63239984	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv3434037	chr11:63170556-63217699	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63184600-63187000	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr11:63185000-63186800	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr11:63185200-63186800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr11:63185200-63187000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr11:63185200-63187000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr11:63185400-63186600	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr11:63185400-63186600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr11:63185600-63186400	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr11:63185800-63186600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr11:63185800-63186600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chr11:63186000-63187000	Enhancers	Primary T cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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