Variant report

Variant	rs4362781
Chromosome Location	chr4:30058995-30058996
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11930356	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12499826	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12499830	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3857024	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3857025	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4364221	1.00[ASN][1000 genomes]
rs4364222	1.00[ASN][1000 genomes]
rs4377550	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4383582	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4515128	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4546205	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4547761	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4692086	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4692436	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4692437	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4692438	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56392617	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57040896	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57714252	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57823715	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs57939446	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58336842	1.00[ASN][1000 genomes]
rs58489717	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59554204	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59690473	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60419278	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60731073	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61358830	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61587428	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66564361	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs66772936	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs66814122	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs66867855	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs66902430	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67012809	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67029788	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67041305	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67487314	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67514230	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67745211	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67888994	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6851743	0.86[EUR][1000 genomes]
rs73217420	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73217421	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73809237	0.92[ASN][1000 genomes]
rs7658741	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7675100	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7700066	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878802	chr4:29972531-30156463	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30058000-30062800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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