Variant report

Variant	rs58336842
Chromosome Location	chr4:30057594-30057595
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs3857024	0.92[ASN][1000 genomes]
rs3857025	0.92[ASN][1000 genomes]
rs4362781	1.00[ASN][1000 genomes]
rs4364221	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4364222	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4377550	1.00[ASN][1000 genomes]
rs59847140	0.82[AFR][1000 genomes]
rs61587428	0.92[ASN][1000 genomes]
rs73809237	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878802	chr4:29972531-30156463	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3498727	chr4:30056804-30058902	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3464984	chr4:30057400-30058003	Enhancers Active TSS Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
4	esv3503198	chr4:30057428-30058009	Active TSS Enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv3503194	chr4:30057438-30057984	Active TSS Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
6	esv3503196	chr4:30057447-30057927	Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
7	esv3464987	chr4:30057450-30057969	Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
8	esv3464988	chr4:30057466-30058034	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
9	esv3464985	chr4:30057467-30057927	Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
10	esv3503192	chr4:30057473-30057943	Active TSS Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
11	esv3503195	chr4:30057474-30057941	Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
12	esv3464983	chr4:30057517-30057897	Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
13	esv3503193	chr4:30057529-30057892	Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
14	esv3464989	chr4:30057531-30057896	Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
15	esv3503199	chr4:30057531-30057896	Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30057000-30058000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr4:30057200-30058000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr4:30057400-30058000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr4:30057400-30058200	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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