Variant report

Variant	rs4364884
Chromosome Location	chr1:151437008-151437009
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:21)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	1:151411623-151426875..1:151436817-151437878	Hela-S3	cervix:
2	1:151436817-151437878..1:151496437-151509688	Hela-S3	cervix:
3	chr1:151436059..151438699-chr1:151467400..151469749,2	MCF-7	breast:
4	1:151219411-151234038..1:151436817-151437878	Hela-S3	cervix:
5	1:151436817-151437878..1:151512437-151516085	GM12878	blood:
6	1:151180715-151199990..1:151436817-151437878	Hela-S3	cervix:
7	chr1:151436153..151438229-chr1:151463732..151466484,2	K562	blood:
8	chr1:151429172..151433890-chr1:151435781..151441025,8	MCF-7	breast:
9	1:151436817-151437878..1:151483211-151496437	Hela-S3	cervix:
10	1:151436817-151437878..1:151618750-151636526	GM12878	blood:
11	1:151270864-151283078..1:151436817-151437878	Hela-S3	cervix:
12	chr1:151436182..151439012-chr1:151480953..151482703,2	MCF-7	breast:
13	chr1:151431741..151434239-chr1:151435568..151437628,2	K562	blood:
14	1:151333184-151350267..1:151436817-151437878	Hela-S3	cervix:
15	1:151203965-151215310..1:151436817-151437878	Hela-S3	cervix:
16	1:151309061-151322694..1:151436817-151437878	Hela-S3	cervix:
17	1:151436817-151437878..1:151516085-151535167	GM12878	blood:
18	1:151254384-151268403..1:151436817-151437878	Hela-S3	cervix:
19	1:151427826-151434310..1:151436817-151437878	Hela-S3	cervix:
20	1:151368336-151375897..1:151436817-151437878	Hela-S3	cervix:
21	1:151436817-151437878..1:151478607-151483211	H1-hESC	embryonic stem cell:	embryo

No data

Variant related genes	Relation type
ENSG00000224645	Chromatin interaction
ENSG00000143390	Chromatin interaction
ENSG00000237976	Chromatin interaction
ENSG00000159352	Chromatin interaction
ENSG00000143442	Chromatin interaction
ENSG00000252840	Chromatin interaction
ENSG00000143398	Chromatin interaction
ENSG00000265753	Chromatin interaction
ENSG00000232671	Chromatin interaction
ENSG00000143373	Chromatin interaction
ENSG00000143376	Chromatin interaction
ENSG00000223861	Chromatin interaction
ENSG00000143375	Chromatin interaction
ENSG00000143416	Chromatin interaction
ENSG00000232536	Chromatin interaction
ENSG00000143367	Chromatin interaction
ENSG00000143393	Chromatin interaction
ENSG00000207606	Chromatin interaction
ENSG00000159377	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10736380	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10749662	0.86[EUR][1000 genomes]
rs11204807	0.86[EUR][1000 genomes]
rs11204808	0.86[EUR][1000 genomes]
rs11204809	0.85[EUR][1000 genomes]
rs11204811	0.88[EUR][1000 genomes]
rs11204815	0.87[EUR][1000 genomes]
rs11204819	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11204824	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11578888	0.88[EUR][1000 genomes]
rs11583968	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11584694	0.86[EUR][1000 genomes]
rs11589645	0.85[EUR][1000 genomes]
rs11801791	0.85[EUR][1000 genomes]
rs12025432	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12029691	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12047617	0.86[EUR][1000 genomes]
rs12068166	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12068368	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12071705	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12120726	0.88[EUR][1000 genomes]
rs12125310	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12740875	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12751531	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16833237	0.86[ASN][1000 genomes]
rs1887544	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1887545	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2274533	0.86[EUR][1000 genomes]
rs2274534	0.85[EUR][1000 genomes]
rs2274535	0.86[EUR][1000 genomes]
rs2479379	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2479385	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2495380	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2864122	0.86[EUR][1000 genomes]
rs3118720	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34884031	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3748550	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3976737	0.84[EUR][1000 genomes]
rs4246526	0.88[EUR][1000 genomes]
rs4246527	0.98[EUR][1000 genomes]
rs4528122	0.88[EUR][1000 genomes]
rs4603	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4971042	0.86[EUR][1000 genomes]
rs4971043	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4971049	0.89[EUR][1000 genomes]
rs61818037	0.83[EUR][1000 genomes]
rs61818039	0.86[EUR][1000 genomes]
rs6587572	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6587573	0.86[EUR][1000 genomes]
rs6587577	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6587584	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6587585	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6684333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6689436	0.86[EUR][1000 genomes]
rs7172	0.86[EUR][1000 genomes]
rs7542776	0.90[EUR][1000 genomes]
rs7546151	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7546933	0.86[EUR][1000 genomes]
rs9659456	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916272	chr1:150961809-151557253	Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	219 gene(s)	inside rSNPs	diseases
2	nsv831581	chr1:151289151-151478605	Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4364884	SELENBP1	cis	Thyroid	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151431000-151445000	Weak transcription	Spleen	Spleen
2	chr1:151432400-151437800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:151432600-151445000	Weak transcription	Fetal Intestine Small	intestine
4	chr1:151432600-151445000	Weak transcription	Pancreas	Pancrea

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