Variant report

Variant	rs6587584
Chromosome Location	chr1:151441080-151441081
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:151429107..151437905-chr1:151438450..151450094,72	MCF-7	breast:
2	chr1:151440909..151442802-chr1:151483388..151486239,2	MCF-7	breast:
3	chr1:151440353..151442706-chr1:151445667..151448207,3	K562	blood:

Variant related genes	Relation type
ENSG00000143442	Chromatin interaction
ENSG00000143375	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10736380	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10749662	0.86[EUR][1000 genomes]
rs11204807	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs11204808	0.86[EUR][1000 genomes]
rs11204809	0.85[EUR][1000 genomes]
rs11204811	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs11204815	0.87[EUR][1000 genomes]
rs11204819	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11204824	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.91[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11578888	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs11583968	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11584694	0.86[EUR][1000 genomes]
rs11589645	0.85[EUR][1000 genomes]
rs11801791	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12025432	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12029691	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12047617	0.86[EUR][1000 genomes]
rs12068166	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12068368	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12071705	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12120726	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs12125310	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12740875	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12743850	0.85[CEU][hapmap]
rs12751531	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16833237	0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs1887544	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1887545	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2274533	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs2274534	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs2274535	0.93[CEU][hapmap];0.86[EUR][1000 genomes]
rs2479379	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2479385	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2495380	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2864122	0.86[EUR][1000 genomes]
rs3118720	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34884031	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3748550	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3811409	0.89[JPT][hapmap]
rs3976737	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs4246526	0.88[EUR][1000 genomes]
rs4246527	1.00[CEU][hapmap];0.81[CHB][hapmap];0.98[EUR][1000 genomes]
rs4291502	0.84[CEU][hapmap]
rs4364884	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4528122	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs4603	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4971042	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs4971043	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4971047	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4971049	0.89[EUR][1000 genomes]
rs61818037	0.83[EUR][1000 genomes]
rs61818039	0.86[EUR][1000 genomes]
rs6587572	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6587573	0.86[EUR][1000 genomes]
rs6587577	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6587585	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6684333	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6689436	0.86[EUR][1000 genomes]
rs7172	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs7542776	0.90[EUR][1000 genomes]
rs7546151	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7546933	0.86[EUR][1000 genomes]
rs9659456	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916272	chr1:150961809-151557253	Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	219 gene(s)	inside rSNPs	diseases
2	nsv831581	chr1:151289151-151478605	Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6587584	SELENBP1	cis	Thyroid	GTEx

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151431000-151445000	Weak transcription	Spleen	Spleen
2	chr1:151432600-151445000	Weak transcription	Fetal Intestine Small	intestine
3	chr1:151432600-151445000	Weak transcription	Pancreas	Pancrea
4	chr1:151438200-151442800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:151440800-151445800	Weak transcription	Gastric	stomach

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