Variant report

Variant	rs4367588
Chromosome Location	chr8:65471503-65471504
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10441541	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10441561	1.00[YRI][hapmap]
rs11996600	0.91[ASN][1000 genomes]
rs1597727	0.91[ASN][1000 genomes]
rs2280870	0.91[CHB][hapmap];0.88[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6990308	0.96[ASN][1000 genomes]
rs7009638	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7009901	1.00[YRI][hapmap]
rs7016250	0.89[ASN][1000 genomes]
rs7831363	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534001	chr8:64992196-65798776	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs4367588	PTTG3P	cis	parietal	SCAN
rs4367588	TTPA	cis	cerebellum	SCAN
rs4367588	NRN1	trans	lymphoblastoid	seeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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