Variant report

Variant	rs4368736
Chromosome Location	chr5:42553901-42553902
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:42545086..42547088-chr5:42551708..42554423,2	MCF-7	breast:
2	chr5:42553184..42555973-chr5:42557554..42559637,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10941578	0.94[EUR][1000 genomes]
rs10941579	0.92[EUR][1000 genomes]
rs11739444	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11740415	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11949751	0.92[EUR][1000 genomes]
rs11955075	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12516901	0.92[EUR][1000 genomes]
rs12521020	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs13176410	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13184352	0.80[EUR][1000 genomes]
rs28943881	0.82[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs34374598	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34466913	0.82[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs34535288	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34895721	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34975809	0.80[EUR][1000 genomes]
rs35090794	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35185573	0.80[EUR][1000 genomes]
rs35500216	0.80[EUR][1000 genomes]
rs4129645	0.80[EUR][1000 genomes]
rs4365846	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4395642	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4496716	0.84[EUR][1000 genomes]
rs4504390	0.82[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs55696942	0.92[EUR][1000 genomes]
rs61197005	0.89[EUR][1000 genomes]
rs67812331	0.80[EUR][1000 genomes]
rs6863381	0.80[EUR][1000 genomes]
rs6865492	0.96[EUR][1000 genomes]
rs6896667	0.84[EUR][1000 genomes]
rs7707913	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7712701	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7714392	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7735889	0.91[EUR][1000 genomes]
rs7736209	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9763260	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
2	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
3	nsv1020464	chr5:42488628-42699394	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1018751	chr5:42491883-42697923	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:42549600-42554400	Weak transcription	Fetal Lung	lung
2	chr5:42549600-42561400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:42550800-42554200	Enhancers	Right Ventricle	heart
4	chr5:42551400-42555200	Weak transcription	Fetal Heart	heart
5	chr5:42552400-42562200	Weak transcription	Right Atrium	heart
6	chr5:42553000-42554200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr5:42553600-42554600	Weak transcription	Psoas Muscle	Psoas
8	chr5:42553600-42555000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr5:42553600-42562200	Weak transcription	Left Ventricle	heart
10	chr5:42553800-42555000	Enhancers	Liver	Liver
11	chr5:42553800-42555000	Weak transcription	Fetal Intestine Large	intestine
12	chr5:42553800-42555000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr5:42553800-42555200	Weak transcription	Adipose Nuclei	Adipose
14	chr5:42553800-42555800	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links