Variant report

Variant	rs7735889
Chromosome Location	chr5:42562199-42562200
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:42548855..42551328-chr5:42561585..42563526,2	MCF-7	breast:
2	chr5:42560399..42563137-chr5:42575975..42577775,2	K562	blood:
3	chr5:42507143..42509893-chr5:42561185..42563258,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10941578	0.96[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10941579	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11739444	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs11740415	1.00[CEU][hapmap];0.87[MKK][hapmap];0.87[TSI][hapmap];0.84[EUR][1000 genomes]
rs11948453	1.00[JPT][hapmap]
rs11949751	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.97[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11955075	1.00[CEU][hapmap];0.87[TSI][hapmap];0.84[EUR][1000 genomes]
rs12516901	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12520276	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12521020	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];0.85[YRI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13160458	0.96[CEU][hapmap]
rs13176410	0.89[EUR][1000 genomes]
rs13184352	0.84[CEU][hapmap]
rs28943881	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34374598	0.92[EUR][1000 genomes]
rs34466913	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34535288	0.94[EUR][1000 genomes]
rs34895721	0.84[EUR][1000 genomes]
rs35090794	0.92[EUR][1000 genomes]
rs4075783	0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4242115	1.00[JPT][hapmap]
rs4305645	1.00[JPT][hapmap]
rs4314405	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs4365846	0.96[CEU][hapmap];0.83[MKK][hapmap];0.87[TSI][hapmap];0.91[EUR][1000 genomes]
rs4368736	0.91[EUR][1000 genomes]
rs4395642	0.96[CEU][hapmap];0.87[TSI][hapmap];0.91[EUR][1000 genomes]
rs4484445	1.00[JPT][hapmap]
rs4489074	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4493680	0.95[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs4496716	0.95[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4504390	0.87[CEU][hapmap];0.92[CHB][hapmap];0.87[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.93[MEX][hapmap];0.91[MKK][hapmap];0.92[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4533898	0.92[ASN][1000 genomes]
rs4554233	1.00[JPT][hapmap]
rs4866791	1.00[JPT][hapmap]
rs4866936	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs55696942	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61197005	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6451626	1.00[JPT][hapmap]
rs6859653	0.92[CEU][hapmap];0.82[CHB][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.95[TSI][hapmap]
rs6863381	0.85[CEU][hapmap]
rs6865492	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6881929	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs6887718	1.00[JPT][hapmap]
rs6896667	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7703713	0.96[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.85[YRI][hapmap]
rs7707913	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7712701	0.93[EUR][1000 genomes]
rs7714392	0.93[EUR][1000 genomes]
rs7721816	1.00[JPT][hapmap]
rs7736209	1.00[CEU][hapmap];0.85[MKK][hapmap];0.87[TSI][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
2	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
3	nsv1020464	chr5:42488628-42699394	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1018751	chr5:42491883-42697923	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:42552400-42562200	Weak transcription	Right Atrium	heart
2	chr5:42553600-42562200	Weak transcription	Left Ventricle	heart
3	chr5:42555400-42566000	Enhancers	Liver	Liver
4	chr5:42556200-42565600	Weak transcription	Right Ventricle	heart
5	chr5:42557600-42565000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr5:42561000-42562800	Enhancers	Adipose Nuclei	Adipose
7	chr5:42561200-42562600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr5:42561400-42562200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:42561400-42562400	Enhancers	Colon Smooth Muscle	Colon
10	chr5:42561800-42562400	Weak transcription	Psoas Muscle	Psoas
11	chr5:42561800-42562600	Enhancers	Fetal Stomach	stomach
12	chr5:42561800-42565000	Weak transcription	Ovary	ovary
13	chr5:42561800-42565600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr5:42562000-42562800	Enhancers	Fetal Heart	heart
15	chr5:42562000-42562800	Enhancers	Stomach Smooth Muscle	stomach
16	chr5:42562000-42563200	Enhancers	Fetal Lung	lung

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