Variant report

Variant	rs4866936
Chromosome Location	chr5:42539193-42539194
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10941578	0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11948453	0.90[JPT][hapmap]
rs11949751	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs12514403	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12515480	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12516901	0.83[ASN][1000 genomes]
rs12517368	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12518010	0.93[AMR][1000 genomes]
rs12518274	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12520276	0.92[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12521020	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs12522222	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12522421	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs13160458	0.90[JPT][hapmap]
rs1509462	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs1509463	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs16872537	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs16872543	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs16872564	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs1979994	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs28498583	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs28943875	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs28943877	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs28943881	0.81[ASN][1000 genomes]
rs34466913	0.81[ASN][1000 genomes]
rs4075783	0.85[CHB][hapmap];0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs4242115	0.90[JPT][hapmap]
rs4305645	0.90[JPT][hapmap]
rs4314405	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4484445	1.00[JPT][hapmap]
rs4489074	0.92[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs4493680	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs4504390	0.84[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs4533898	0.82[ASN][1000 genomes]
rs4554233	0.90[JPT][hapmap]
rs4866781	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4866782	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4866788	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4866790	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs4866791	0.90[JPT][hapmap]
rs4866795	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4866896	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4866901	0.93[AMR][1000 genomes]
rs4866919	0.86[AMR][1000 genomes]
rs4866932	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4866933	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4866935	0.93[AMR][1000 genomes]
rs58179197	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs6451626	0.90[JPT][hapmap]
rs6859653	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs6887718	0.90[JPT][hapmap]
rs6896667	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs7703713	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs7721816	0.90[JPT][hapmap]
rs7735889	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs949559	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
2	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
3	nsv1020464	chr5:42488628-42699394	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1018751	chr5:42491883-42697923	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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