Variant report

Variant	rs13160458
Chromosome Location	chr5:42535563-42535564
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10941578	1.00[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10941579	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11739444	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs11740415	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs11949751	0.96[CEU][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11955075	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs12516901	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12521020	0.96[CEU][hapmap];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13156541	0.81[CEU][hapmap]
rs13176410	0.85[EUR][1000 genomes]
rs13184352	0.88[CEU][hapmap]
rs17636762	0.81[CEU][hapmap]
rs28943881	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34374598	0.91[EUR][1000 genomes]
rs34466913	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34535288	0.87[EUR][1000 genomes]
rs34895721	0.80[EUR][1000 genomes]
rs35090794	0.91[EUR][1000 genomes]
rs4314405	0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs4365846	1.00[CEU][hapmap];0.88[YRI][hapmap];0.92[EUR][1000 genomes]
rs4368736	0.92[EUR][1000 genomes]
rs4395642	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs4484445	0.88[JPT][hapmap]
rs4493680	1.00[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs4496716	0.87[CEU][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4504390	0.92[CEU][hapmap];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4866936	0.90[JPT][hapmap]
rs55696942	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61197005	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6859653	0.96[CEU][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs6863381	0.91[CEU][hapmap]
rs6865492	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6881929	0.96[CEU][hapmap]
rs6896667	0.96[CEU][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7703713	1.00[CEU][hapmap];0.89[JPT][hapmap]
rs7707913	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs7712701	0.88[EUR][1000 genomes]
rs7714392	0.89[EUR][1000 genomes]
rs7735889	0.96[CEU][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7736209	0.96[CEU][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
2	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
3	nsv1020464	chr5:42488628-42699394	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1018751	chr5:42491883-42697923	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links