Variant report

Variant	rs6859653
Chromosome Location	chr5:42537284-42537285
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10941578	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10941579	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11739444	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs11740415	0.92[CEU][hapmap];0.87[TSI][hapmap];0.80[EUR][1000 genomes]
rs11948453	0.90[JPT][hapmap]
rs11949751	0.92[CEU][hapmap];0.82[CHB][hapmap];0.82[CHD][hapmap];0.89[GIH][hapmap];0.90[JPT][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11955075	0.92[CEU][hapmap];0.87[TSI][hapmap];0.80[EUR][1000 genomes]
rs12516901	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12520276	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs12521020	0.92[CEU][hapmap];0.82[CHB][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.97[TSI][hapmap];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13160458	0.96[CEU][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs13176410	0.85[EUR][1000 genomes]
rs13184352	0.83[CEU][hapmap]
rs28943881	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34374598	0.91[EUR][1000 genomes]
rs34466913	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34535288	0.87[EUR][1000 genomes]
rs34895721	0.80[EUR][1000 genomes]
rs35090794	0.91[EUR][1000 genomes]
rs4075783	0.89[JPT][hapmap]
rs4242115	0.90[JPT][hapmap]
rs4305645	0.90[JPT][hapmap]
rs4314405	0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4365846	0.83[ASW][hapmap];0.96[CEU][hapmap];0.87[TSI][hapmap];0.89[YRI][hapmap];0.92[EUR][1000 genomes]
rs4368736	0.92[EUR][1000 genomes]
rs4395642	0.83[ASW][hapmap];0.96[CEU][hapmap];0.89[TSI][hapmap];0.92[EUR][1000 genomes]
rs4484445	1.00[JPT][hapmap]
rs4489074	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs4493680	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4496716	0.91[CEU][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4504390	0.89[ASW][hapmap];0.88[CEU][hapmap];0.83[CHD][hapmap];0.96[GIH][hapmap];0.90[JPT][hapmap];0.83[MKK][hapmap];0.92[TSI][hapmap];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4554233	0.90[JPT][hapmap]
rs4866791	0.90[JPT][hapmap]
rs4866936	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs55696942	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61197005	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6451626	0.90[JPT][hapmap]
rs6863381	0.85[CEU][hapmap]
rs6865492	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6881929	0.92[CEU][hapmap];0.95[TSI][hapmap]
rs6887718	0.90[JPT][hapmap]
rs6896667	0.92[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7703713	0.96[CEU][hapmap];0.82[CHB][hapmap];0.82[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap]
rs7707913	0.91[CEU][hapmap];0.80[EUR][1000 genomes]
rs7712701	0.88[EUR][1000 genomes]
rs7714392	0.89[EUR][1000 genomes]
rs7721816	0.90[JPT][hapmap]
rs7735889	0.92[CEU][hapmap];0.82[CHB][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7736209	0.92[CEU][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
2	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
3	nsv1020464	chr5:42488628-42699394	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1018751	chr5:42491883-42697923	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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