Variant report

Variant	rs4371863
Chromosome Location	chr6:132202397-132202398
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12660595	1.00[AMR][1000 genomes]
rs12661063	1.00[AMR][1000 genomes]
rs12662953	1.00[AMR][1000 genomes]
rs12663389	1.00[AMR][1000 genomes]
rs12664747	1.00[AMR][1000 genomes]
rs12664750	1.00[AMR][1000 genomes]
rs12665617	1.00[AMR][1000 genomes]
rs3908474	1.00[AMR][1000 genomes]
rs61027777	1.00[AMR][1000 genomes]
rs73537697	1.00[AMR][1000 genomes]
rs73539605	1.00[AMR][1000 genomes]
rs73539606	1.00[AMR][1000 genomes]
rs73539675	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv886671	chr6:132071193-132203432	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132162200-132211000	Weak transcription	Fetal Kidney	kidney
2	chr6:132163000-132213600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:132170800-132211200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr6:132171200-132209400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr6:132180600-132213200	Strong transcription	Liver	Liver
6	chr6:132182000-132214200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr6:132184400-132209400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr6:132184800-132213200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:132185200-132217200	Weak transcription	Psoas Muscle	Psoas
10	chr6:132185800-132212600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr6:132186200-132213800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr6:132186600-132212400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:132190000-132210000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:132190000-132211400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:132190000-132213200	Strong transcription	HepG2	liver
16	chr6:132190200-132214000	Weak transcription	NHDF-Ad	bronchial
17	chr6:132190600-132216200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:132192200-132213800	Weak transcription	Pancreas	Pancrea
19	chr6:132192800-132202800	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr6:132195200-132212800	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr6:132195600-132202400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
22	chr6:132196800-132211000	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr6:132197400-132207600	Weak transcription	NH-A	brain
24	chr6:132197800-132206000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr6:132198000-132202800	Strong transcription	Osteobl	bone
26	chr6:132199400-132202800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:132199400-132209200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:132200000-132203000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr6:132200000-132209400	Weak transcription	HSMM	muscle
30	chr6:132200600-132207600	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr6:132201200-132202800	Strong transcription	Fetal Muscle Trunk	muscle
32	chr6:132201200-132202800	Strong transcription	Fetal Muscle Leg	muscle
33	chr6:132201200-132202800	Strong transcription	Fetal Stomach	stomach
34	chr6:132201200-132207800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr6:132201400-132209200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr6:132201400-132209600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr6:132202200-132203000	Weak transcription	Gastric	stomach
38	chr6:132202200-132204400	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr6:132202200-132205400	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr6:132202200-132205400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr6:132202200-132205400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr6:132202200-132205400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr6:132202200-132205400	Weak transcription	Placenta	Placenta
44	chr6:132202200-132205600	Weak transcription	Adipose Nuclei	Adipose
45	chr6:132202200-132205800	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr6:132202200-132209000	Weak transcription	Fetal Intestine Small	intestine
47	chr6:132202200-132209200	Weak transcription	NHLF	lung
48	chr6:132202200-132209400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr6:132202200-132209600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr6:132202200-132211200	Weak transcription	H9 Cell Line	embryonic stem cell

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