Variant report

Variant	rs73537697
Chromosome Location	chr6:132161873-132161874
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131972370..131974567-chr6:132160940..132163903,2	MCF-7	breast:
2	chr6:132148080..132149718-chr6:132160406..132162447,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000154269	Chromatin interaction
ENSG00000237115	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12660595	1.00[AMR][1000 genomes]
rs12661063	1.00[AMR][1000 genomes]
rs12662953	1.00[AMR][1000 genomes]
rs12663389	1.00[AMR][1000 genomes]
rs12664747	1.00[AMR][1000 genomes]
rs12664750	1.00[AMR][1000 genomes]
rs12665617	1.00[AMR][1000 genomes]
rs3908474	1.00[AMR][1000 genomes]
rs4371863	1.00[AMR][1000 genomes]
rs61027777	1.00[AMR][1000 genomes]
rs73539605	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73539606	1.00[AMR][1000 genomes]
rs73539675	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv886670	chr6:132071193-132193395	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	nsv886671	chr6:132071193-132203432	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132132800-132162400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:132132800-132162800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:132138600-132163000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:132141000-132176000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:132141600-132172000	Weak transcription	HSMM	muscle
6	chr6:132145800-132171800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr6:132147600-132199200	Weak transcription	Fetal Stomach	stomach
8	chr6:132149600-132162000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr6:132149800-132172200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:132151600-132164800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:132151600-132182400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr6:132154200-132171800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr6:132158200-132162000	Weak transcription	Fetal Kidney	kidney
14	chr6:132158200-132162800	Weak transcription	Pancreas	Pancrea
15	chr6:132158200-132164600	Weak transcription	NHLF	lung
16	chr6:132158200-132171200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr6:132158400-132165000	Enhancers	HepG2	liver
18	chr6:132159600-132162400	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr6:132159600-132162600	Weak transcription	NHDF-Ad	bronchial
20	chr6:132159600-132164800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:132159600-132176000	Weak transcription	NH-A	brain
22	chr6:132159600-132179800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr6:132160000-132180600	Weak transcription	Placenta	Placenta
24	chr6:132160200-132164600	Enhancers	Liver	Liver
25	chr6:132160400-132164800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr6:132160800-132162000	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr6:132161800-132162200	Active TSS	HSMMtube	muscle
28	chr6:132161800-132162800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr6:132161800-132163000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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