Variant report

Variant	rs4374892
Chromosome Location	chr7:39651160-39651161
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:39650565..39652654-chr7:39656669..39659606,2	MCF-7	breast:
2	chr7:39649814..39652615-chr7:39661583..39664092,3	MCF-7	breast:
3	chr7:39650430..39653003-chr7:39667356..39670007,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-YAE1D1-1	chr7:39649086-39651687	NONHSAT120210

Variant related genes	Relation type
ENSG00000006451	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10486797	0.94[AMR][1000 genomes]
rs16880073	0.95[AMR][1000 genomes]
rs4236362	1.00[AMR][1000 genomes]
rs4723886	0.95[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887970	chr7:39587912-39688152	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39645200-39661600	Weak transcription	A549	lung
2	chr7:39648400-39651800	Flanking Active TSS	HUVEC	blood vessel
3	chr7:39648800-39656000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:39649400-39652800	Weak transcription	Osteobl	bone
5	chr7:39649400-39654600	Weak transcription	Pancreas	Pancrea
6	chr7:39649600-39653400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr7:39649600-39655400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr7:39649600-39655600	Weak transcription	HSMMtube	muscle
9	chr7:39649800-39651200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr7:39649800-39651200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr7:39649800-39651400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr7:39649800-39653600	Weak transcription	HSMM	muscle
13	chr7:39649800-39655000	Weak transcription	Hela-S3	cervix
14	chr7:39649800-39655200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr7:39649800-39655200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr7:39649800-39655600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr7:39650000-39651800	Weak transcription	Gastric	stomach
18	chr7:39650000-39652600	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr7:39650000-39653200	Weak transcription	NHDF-Ad	bronchial
20	chr7:39650000-39653400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr7:39650000-39653400	Weak transcription	NH-A	brain
22	chr7:39650000-39653600	Weak transcription	K562	blood
23	chr7:39650000-39654800	Weak transcription	Stomach Mucosa	stomach
24	chr7:39650000-39655000	Weak transcription	NHLF	lung
25	chr7:39650200-39651800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr7:39650200-39655400	Weak transcription	HMEC	breast
27	chr7:39650400-39652400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr7:39650400-39653200	Weak transcription	NHEK	skin
29	chr7:39651000-39651800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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