Variant report

Variant	rs4723886
Chromosome Location	chr7:39652016-39652017
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:39650565..39652654-chr7:39656669..39659606,2	MCF-7	breast:
2	chr7:39649814..39652615-chr7:39661583..39664092,3	MCF-7	breast:
3	chr7:39638958..39641769-chr7:39651985..39654836,2	K562	blood:
4	chr7:39651686..39654390-chr7:39655088..39657553,2	K562	blood:
5	chr7:39650430..39653003-chr7:39667356..39670007,2	K562	blood:

Variant related genes	Relation type
ENSG00000006451	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10486797	0.89[AMR][1000 genomes]
rs11983705	1.00[EUR][1000 genomes]
rs11983755	1.00[EUR][1000 genomes]
rs16870185	0.82[EUR][1000 genomes]
rs16880070	0.82[EUR][1000 genomes]
rs16880073	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17171605	1.00[EUR][1000 genomes]
rs17171606	1.00[EUR][1000 genomes]
rs2329409	1.00[EUR][1000 genomes]
rs2876857	1.00[EUR][1000 genomes]
rs2876859	1.00[EUR][1000 genomes]
rs2876860	1.00[EUR][1000 genomes]
rs4236361	1.00[EUR][1000 genomes]
rs4236362	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4236363	1.00[EUR][1000 genomes]
rs4374892	0.95[AMR][1000 genomes]
rs4720332	0.90[EUR][1000 genomes]
rs4723890	0.90[EUR][1000 genomes]
rs4723896	0.82[EUR][1000 genomes]
rs56844739	1.00[EUR][1000 genomes]
rs56895888	1.00[EUR][1000 genomes]
rs59434915	0.90[EUR][1000 genomes]
rs60565944	0.82[EUR][1000 genomes]
rs6948816	0.90[EUR][1000 genomes]
rs6949371	0.90[EUR][1000 genomes]
rs6963428	0.90[EUR][1000 genomes]
rs73377388	1.00[EUR][1000 genomes]
rs73379304	1.00[EUR][1000 genomes]
rs73689214	0.90[EUR][1000 genomes]
rs73689251	0.90[EUR][1000 genomes]
rs73689252	0.90[EUR][1000 genomes]
rs73689294	0.82[EUR][1000 genomes]
rs7788924	0.90[EUR][1000 genomes]
rs7789326	0.82[EUR][1000 genomes]
rs7805611	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887970	chr7:39587912-39688152	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39645200-39661600	Weak transcription	A549	lung
2	chr7:39648800-39656000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:39649400-39652800	Weak transcription	Osteobl	bone
4	chr7:39649400-39654600	Weak transcription	Pancreas	Pancrea
5	chr7:39649600-39653400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr7:39649600-39655400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr7:39649600-39655600	Weak transcription	HSMMtube	muscle
8	chr7:39649800-39653600	Weak transcription	HSMM	muscle
9	chr7:39649800-39655000	Weak transcription	Hela-S3	cervix
10	chr7:39649800-39655200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr7:39649800-39655200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr7:39649800-39655600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr7:39650000-39652600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr7:39650000-39653200	Weak transcription	NHDF-Ad	bronchial
15	chr7:39650000-39653400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr7:39650000-39653400	Weak transcription	NH-A	brain
17	chr7:39650000-39653600	Weak transcription	K562	blood
18	chr7:39650000-39654800	Weak transcription	Stomach Mucosa	stomach
19	chr7:39650000-39655000	Weak transcription	NHLF	lung
20	chr7:39650200-39655400	Weak transcription	HMEC	breast
21	chr7:39650400-39652400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr7:39650400-39653200	Weak transcription	NHEK	skin
23	chr7:39651200-39652400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr7:39651200-39652400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr7:39651400-39653600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr7:39651800-39657000	Enhancers	HUVEC	blood vessel
27	chr7:39652000-39652600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr7:39652000-39652800	Weak transcription	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links