Variant report

Variant	rs2329409
Chromosome Location	chr7:39569522-39569523
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11983705	1.00[EUR][1000 genomes]
rs11983755	1.00[EUR][1000 genomes]
rs16870185	0.82[EUR][1000 genomes]
rs16880070	0.82[EUR][1000 genomes]
rs16880073	1.00[EUR][1000 genomes]
rs17171605	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17171606	1.00[EUR][1000 genomes]
rs2876857	1.00[EUR][1000 genomes]
rs2876859	1.00[EUR][1000 genomes]
rs2876860	1.00[EUR][1000 genomes]
rs4236361	1.00[EUR][1000 genomes]
rs4236362	1.00[EUR][1000 genomes]
rs4236363	1.00[EUR][1000 genomes]
rs4720332	0.90[EUR][1000 genomes]
rs4723886	1.00[EUR][1000 genomes]
rs4723890	0.90[EUR][1000 genomes]
rs4723896	0.82[EUR][1000 genomes]
rs56844739	1.00[EUR][1000 genomes]
rs56895888	1.00[EUR][1000 genomes]
rs59434915	0.90[EUR][1000 genomes]
rs60565944	0.82[EUR][1000 genomes]
rs6948816	0.90[EUR][1000 genomes]
rs6949371	0.90[EUR][1000 genomes]
rs6963428	0.90[EUR][1000 genomes]
rs73377388	1.00[EUR][1000 genomes]
rs73379304	1.00[EUR][1000 genomes]
rs73689214	0.90[EUR][1000 genomes]
rs73689251	0.90[EUR][1000 genomes]
rs73689252	0.90[EUR][1000 genomes]
rs73689294	0.82[EUR][1000 genomes]
rs7788924	0.90[EUR][1000 genomes]
rs7789326	0.82[EUR][1000 genomes]
rs7805611	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021180	chr7:39424988-39642261	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1026951	chr7:39429036-39642261	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv966782	chr7:39454992-39581886	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1018430	chr7:39455497-39643569	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39567200-39569600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr7:39567200-39573200	Weak transcription	Small Intestine	intestine
3	chr7:39568200-39571000	Enhancers	Dnd41	blood
4	chr7:39568200-39576400	Enhancers	Fetal Intestine Large	intestine
5	chr7:39568400-39576400	Enhancers	Fetal Intestine Small	intestine
6	chr7:39568600-39571200	Enhancers	Duodenum Mucosa	Duodenum
7	chr7:39568800-39570400	Enhancers	Fetal Brain Male	brain
8	chr7:39569200-39570200	Enhancers	Sigmoid Colon	Sigmoid Colon
9	chr7:39569400-39569600	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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