Variant report

Variant	rs2876857
Chromosome Location	chr7:39634792-39634793
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:39634741..39636459-chr7:39661820..39664615,2	K562	blood:
2	chr7:39629985..39632213-chr7:39633896..39637546,5	K562	blood:

Variant related genes	Relation type
ENSG00000006451	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11983705	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11983755	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16870185	0.82[EUR][1000 genomes]
rs16880070	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16880073	1.00[EUR][1000 genomes]
rs17171605	1.00[EUR][1000 genomes]
rs17171606	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2329409	1.00[EUR][1000 genomes]
rs2876859	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2876860	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4236361	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4236362	1.00[EUR][1000 genomes]
rs4236363	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4720332	0.90[EUR][1000 genomes]
rs4723886	1.00[EUR][1000 genomes]
rs4723890	0.90[EUR][1000 genomes]
rs4723896	0.82[EUR][1000 genomes]
rs56844739	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56895888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59434915	0.90[EUR][1000 genomes]
rs60565944	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6948816	0.90[EUR][1000 genomes]
rs6949371	0.90[EUR][1000 genomes]
rs6963428	0.90[EUR][1000 genomes]
rs73377388	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73379304	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73689214	0.90[EUR][1000 genomes]
rs73689251	0.90[EUR][1000 genomes]
rs73689252	0.90[EUR][1000 genomes]
rs73689294	0.82[EUR][1000 genomes]
rs7788924	0.90[EUR][1000 genomes]
rs7789326	0.82[EUR][1000 genomes]
rs7805611	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021180	chr7:39424988-39642261	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1026951	chr7:39429036-39642261	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1018430	chr7:39455497-39643569	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv887970	chr7:39587912-39688152	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv966713	chr7:39629620-39638513	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39626400-39635800	Enhancers	HUVEC	blood vessel
2	chr7:39629400-39637000	Weak transcription	Stomach Mucosa	stomach
3	chr7:39629600-39640400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:39629600-39641800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr7:39632600-39634800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:39632600-39646000	Weak transcription	K562	blood
7	chr7:39632800-39634800	Weak transcription	NHDF-Ad	bronchial
8	chr7:39632800-39641600	Weak transcription	Osteobl	bone
9	chr7:39633000-39634800	Weak transcription	NH-A	brain
10	chr7:39633200-39641400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:39634000-39640400	Weak transcription	HSMM	muscle
12	chr7:39634000-39641600	Weak transcription	HSMMtube	muscle
13	chr7:39634400-39635400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr7:39634400-39635600	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr7:39634600-39635200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr7:39634600-39635200	Enhancers	Muscle Satellite Cultured Cells	--
17	chr7:39634600-39635400	Enhancers	Adipose Nuclei	Adipose
18	chr7:39634600-39635400	Enhancers	Fetal Lung	lung
19	chr7:39634600-39635600	Enhancers	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links