Variant report

Variant	rs16870185
Chromosome Location	chr7:39687153-39687154
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:39686447..39688717-chr7:39690234..39692105,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11983705	0.82[EUR][1000 genomes]
rs11983755	0.82[EUR][1000 genomes]
rs16880070	0.82[MEX][hapmap]
rs16880073	0.82[EUR][1000 genomes]
rs17171605	0.82[EUR][1000 genomes]
rs17171606	0.82[EUR][1000 genomes]
rs2329409	0.82[EUR][1000 genomes]
rs2876857	0.82[EUR][1000 genomes]
rs2876859	0.82[EUR][1000 genomes]
rs2876860	0.82[EUR][1000 genomes]
rs4236361	0.82[EUR][1000 genomes]
rs4236362	0.82[EUR][1000 genomes]
rs4236363	0.82[EUR][1000 genomes]
rs4720332	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4723886	0.82[EUR][1000 genomes]
rs4723890	0.91[EUR][1000 genomes]
rs4723896	1.00[GIH][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs56844739	0.82[EUR][1000 genomes]
rs56895888	0.82[EUR][1000 genomes]
rs59434915	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6942614	0.88[AFR][1000 genomes]
rs6948816	0.83[ASW][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6949371	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6963428	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73377388	0.82[EUR][1000 genomes]
rs73379304	0.82[EUR][1000 genomes]
rs73689214	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73689251	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73689252	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73689294	0.82[EUR][1000 genomes]
rs7788924	1.00[GIH][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs7789326	1.00[GIH][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs7805611	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887970	chr7:39587912-39688152	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv508451	chr7:39660784-39787222	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv887971	chr7:39662268-39745775	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv887972	chr7:39666267-39733688	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39666200-39694400	Weak transcription	Fetal Brain Female	brain
2	chr7:39667200-39698800	Weak transcription	Fetal Kidney	kidney
3	chr7:39671800-39693800	Weak transcription	A549	lung
4	chr7:39672200-39722800	Weak transcription	Hela-S3	cervix
5	chr7:39674000-39690200	Weak transcription	NH-A	brain
6	chr7:39674000-39690800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr7:39674200-39690000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr7:39674200-39691400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr7:39674200-39696000	Weak transcription	Thymus	Thymus
10	chr7:39675200-39708800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr7:39675600-39688200	Weak transcription	Fetal Stomach	stomach
12	chr7:39675600-39701400	Weak transcription	Fetal Muscle Trunk	muscle
13	chr7:39675800-39691600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr7:39676600-39690200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr7:39676600-39694400	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr7:39676600-39694400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr7:39676600-39694400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr7:39677400-39694200	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr7:39678000-39687800	Weak transcription	Fetal Muscle Leg	muscle
20	chr7:39678800-39694400	Weak transcription	Primary B cells from peripheral blood	blood
21	chr7:39679600-39695800	Weak transcription	Primary B cells from cord blood	blood
22	chr7:39680000-39700800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr7:39680000-39701000	Weak transcription	Esophagus	oesophagus
24	chr7:39680000-39721600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr7:39680400-39687400	Weak transcription	Primary T cells from cord blood	blood
26	chr7:39680800-39689000	Weak transcription	NHDF-Ad	bronchial
27	chr7:39680800-39704200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr7:39680800-39716400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr7:39682000-39700600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr7:39682000-39704000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr7:39682000-39704000	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr7:39682400-39694400	Weak transcription	Fetal Intestine Large	intestine
33	chr7:39682400-39700600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr7:39682600-39688200	Weak transcription	Fetal Intestine Small	intestine
35	chr7:39682600-39696000	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr7:39682600-39702600	Weak transcription	Gastric	stomach
37	chr7:39682800-39690200	Weak transcription	Stomach Mucosa	stomach
38	chr7:39682800-39722000	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr7:39683400-39689800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr7:39683400-39701200	Weak transcription	Lung	lung
41	chr7:39683400-39716600	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr7:39683600-39690200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr7:39683600-39696600	Weak transcription	Pancreas	Pancrea
44	chr7:39683600-39712600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr7:39684000-39687800	Weak transcription	HUVEC	blood vessel
46	chr7:39684000-39690000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr7:39684000-39694600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr7:39684400-39689800	Weak transcription	Osteobl	bone
49	chr7:39684600-39689000	Weak transcription	NHLF	lung
50	chr7:39684600-39690200	Weak transcription	Muscle Satellite Cultured Cells	--

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