Variant report

Variant	rs17171605
Chromosome Location	chr7:39623703-39623704
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:39623431..39626186-chr7:39627006..39629338,2	MCF-7	breast:
2	chr7:39621618..39625232-chr7:39625771..39627613,3	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11983705	1.00[EUR][1000 genomes]
rs11983755	1.00[EUR][1000 genomes]
rs16870185	0.82[EUR][1000 genomes]
rs16880070	1.00[GIH][hapmap];0.82[EUR][1000 genomes]
rs16880073	1.00[EUR][1000 genomes]
rs17171606	1.00[EUR][1000 genomes]
rs2329409	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2876857	1.00[EUR][1000 genomes]
rs2876859	1.00[EUR][1000 genomes]
rs2876860	1.00[EUR][1000 genomes]
rs4236361	1.00[EUR][1000 genomes]
rs4236362	1.00[EUR][1000 genomes]
rs4236363	1.00[EUR][1000 genomes]
rs4720332	0.90[EUR][1000 genomes]
rs4723886	1.00[EUR][1000 genomes]
rs4723890	0.90[EUR][1000 genomes]
rs4723896	0.82[EUR][1000 genomes]
rs56844739	1.00[EUR][1000 genomes]
rs56895888	1.00[EUR][1000 genomes]
rs59434915	0.90[EUR][1000 genomes]
rs60565944	0.82[EUR][1000 genomes]
rs6948816	0.90[EUR][1000 genomes]
rs6949371	0.90[EUR][1000 genomes]
rs6963428	0.90[EUR][1000 genomes]
rs73377388	1.00[EUR][1000 genomes]
rs73379304	1.00[EUR][1000 genomes]
rs73689214	0.90[EUR][1000 genomes]
rs73689251	0.90[EUR][1000 genomes]
rs73689252	0.90[EUR][1000 genomes]
rs73689294	0.82[EUR][1000 genomes]
rs7788924	0.90[EUR][1000 genomes]
rs7789326	0.82[EUR][1000 genomes]
rs7805611	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021180	chr7:39424988-39642261	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1026951	chr7:39429036-39642261	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1018430	chr7:39455497-39643569	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv887970	chr7:39587912-39688152	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39607000-39623800	Weak transcription	Pancreas	Pancrea
2	chr7:39607000-39631400	Weak transcription	Aorta	Aorta
3	chr7:39607200-39628800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr7:39607200-39629000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr7:39607600-39628600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr7:39607600-39629400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr7:39610800-39628800	Weak transcription	GM12878-XiMat	blood
8	chr7:39612200-39627000	Weak transcription	NHLF	lung
9	chr7:39612400-39626600	Weak transcription	HSMM	muscle
10	chr7:39612400-39628000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr7:39612600-39628000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr7:39612600-39629200	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr7:39613400-39628800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr7:39613800-39627600	Weak transcription	Primary hematopoietic stem cells	blood
15	chr7:39613800-39628800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr7:39613800-39629000	Weak transcription	HMEC	breast
17	chr7:39614200-39629200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr7:39614800-39629200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr7:39616400-39627800	Weak transcription	Adipose Nuclei	Adipose
20	chr7:39616400-39629000	Weak transcription	Osteobl	bone
21	chr7:39617000-39628200	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr7:39617200-39629600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr7:39617400-39626800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr7:39617400-39629000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr7:39618400-39629000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr7:39618400-39633000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr7:39618800-39626400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr7:39619000-39628200	Weak transcription	Primary T cells from cord blood	blood
29	chr7:39619000-39629000	Weak transcription	Fetal Thymus	thymus
30	chr7:39619600-39629000	Weak transcription	Fetal Muscle Leg	muscle
31	chr7:39619800-39626400	Weak transcription	Fetal Stomach	stomach
32	chr7:39620400-39628600	Weak transcription	NH-A	brain
33	chr7:39620600-39628000	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr7:39620600-39628800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr7:39620800-39626400	Weak transcription	HUVEC	blood vessel
36	chr7:39620800-39626800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr7:39620800-39627800	Weak transcription	K562	blood
38	chr7:39620800-39628600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr7:39622200-39624200	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr7:39622600-39624200	Enhancers	HUES64 Cell Line	embryonic stem cell
41	chr7:39622600-39629000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr7:39622800-39624000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr7:39623000-39624000	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr7:39623000-39624000	Enhancers	iPS-18 Cell Line	embryonic stem cell
45	chr7:39623200-39624000	Enhancers	iPS-20b Cell Line	embryonic stem cell
46	chr7:39623400-39623800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr7:39623400-39624000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
48	chr7:39623400-39624000	Enhancers	NHEK	skin
49	chr7:39623400-39624200	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr7:39623600-39625000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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