Variant report

Variant	rs4375637
Chromosome Location	chr15:73345772-73345773
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73074691..73078350-chr15:73341676..73346479,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000159322	Chromatin interaction
ENSG00000260898	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1023924	0.80[CHB][hapmap]
rs1038137	0.88[CHB][hapmap]
rs10467948	0.88[CHB][hapmap]
rs12050774	0.80[CHB][hapmap]
rs12912599	0.80[ASN][1000 genomes]
rs13379875	0.87[CHB][hapmap]
rs16957727	1.00[EUR][1000 genomes]
rs17762600	0.80[CHB][hapmap]
rs17829830	0.80[CHB][hapmap]
rs17829957	0.80[CHB][hapmap]
rs2169951	0.88[CHB][hapmap]
rs3784794	1.00[EUR][1000 genomes]
rs4132536	0.86[CHB][hapmap]
rs4777590	0.87[CHB][hapmap]
rs8026121	0.81[CHB][hapmap]
rs9972555	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv482421	chr15:73279141-73426897	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv904338	chr15:73313691-73483718	Enhancers Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv3438792	chr15:73343424-73346772	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	esv3410525	chr15:73343674-73346347	Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	esv3323077	chr15:73343899-73345997	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73343000-73346000	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr15:73343200-73345800	Active TSS	Breast Myoepithelial Primary Cells	Breast
3	chr15:73343200-73346000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
4	chr15:73343200-73346000	Active TSS	Brain Anterior Caudate	brain
5	chr15:73343200-73346200	Active TSS	Brain Inferior Temporal Lobe	brain
6	chr15:73343200-73346400	Active TSS	H1 Cell Line	embryonic stem cell
7	chr15:73343200-73346400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr15:73343200-73346400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
9	chr15:73343200-73346600	Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr15:73343200-73347600	Active TSS	Colonic Mucosa	Colon
11	chr15:73343400-73345800	Active TSS	Rectal Mucosa Donor 29	rectum
12	chr15:73343400-73346200	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr15:73343400-73346200	Active TSS	iPS-18 Cell Line	embryonic stem cell
14	chr15:73343400-73346200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr15:73343400-73346200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr15:73343400-73346200	Active TSS	Brain Angular Gyrus	brain
17	chr15:73343400-73346200	Active TSS	Psoas Muscle	Psoas
18	chr15:73343400-73346200	Active TSS	Right Ventricle	heart
19	chr15:73343400-73346400	Active TSS	H9 Cell Line	embryonic stem cell
20	chr15:73343400-73346400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr15:73343400-73346600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
22	chr15:73343400-73346800	Active TSS	Aorta	Aorta
23	chr15:73343600-73345800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr15:73343600-73345800	Active TSS	Colon Smooth Muscle	Colon
25	chr15:73343600-73345800	Active TSS	Small Intestine	intestine
26	chr15:73343600-73346000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr15:73343600-73346000	Active TSS	HUES64 Cell Line	embryonic stem cell
28	chr15:73343600-73346000	Active TSS	Fetal Brain Female	brain
29	chr15:73343600-73346000	Active TSS	Gastric	stomach
30	chr15:73343600-73346000	Active TSS	Left Ventricle	heart
31	chr15:73343600-73346000	Active TSS	Pancreas	Pancrea
32	chr15:73343600-73346000	Active TSS	HSMMtube	muscle
33	chr15:73343600-73346200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr15:73343600-73346200	Active TSS	iPS-15b Cell Line	embryonic stem cell
35	chr15:73343600-73346200	Active TSS	Rectal Smooth Muscle	rectum
36	chr15:73343600-73346400	Active TSS	Brain Hippocampus Middle	brain
37	chr15:73343600-73346400	Active TSS	Ovary	ovary
38	chr15:73343600-73346400	Active TSS	Stomach Smooth Muscle	stomach
39	chr15:73343600-73346600	Active TSS	Brain Substantia Nigra	brain
40	chr15:73343600-73346600	Active TSS	Duodenum Smooth Muscle	Duodenum
41	chr15:73343600-73346600	Active TSS	Fetal Intestine Large	intestine
42	chr15:73343600-73346800	Active TSS	HUES48 Cell Line	embryonic stem cell
43	chr15:73343600-73346800	Active TSS	iPS-20b Cell Line	embryonic stem cell
44	chr15:73343600-73347000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr15:73343600-73347400	Active TSS	Fetal Intestine Small	intestine
46	chr15:73343800-73345800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr15:73343800-73345800	Active TSS	Lung	lung
48	chr15:73343800-73345800	Active TSS	A549	lung
49	chr15:73343800-73345800	Active TSS	HepG2	liver
50	chr15:73343800-73346000	Active TSS	Fetal Lung	lung

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