Variant report

Variant	rs3784794
Chromosome Location	chr15:73547829-73547830
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HCN4-1	chr15:73547675-73547875	ENSG00000259528.1

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16957727	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2127278	0.92[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3784793	0.82[CHB][hapmap]
rs3817374	1.00[AMR][1000 genomes]
rs4375637	1.00[EUR][1000 genomes]
rs9972555	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525462	chr15:73349633-73563495	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73520400-73562400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr15:73520600-73579600	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:73523000-73572200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr15:73525000-73548800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr15:73527000-73579400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr15:73527400-73551600	Weak transcription	Small Intestine	intestine
7	chr15:73527600-73562400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr15:73529000-73552600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr15:73530800-73551200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr15:73535200-73588000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr15:73536000-73550800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr15:73536200-73602000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr15:73536400-73559200	Strong transcription	Rectal Mucosa Donor 31	rectum
14	chr15:73536400-73566600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr15:73536800-73562400	Weak transcription	A549	lung
16	chr15:73537600-73572200	Weak transcription	Fetal Heart	heart
17	chr15:73538000-73593400	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr15:73538200-73562600	Strong transcription	Fetal Intestine Large	intestine
19	chr15:73540000-73552000	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr15:73540000-73565400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr15:73540000-73584800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr15:73540800-73562400	Weak transcription	HepG2	liver
23	chr15:73541600-73550200	Weak transcription	Colonic Mucosa	Colon
24	chr15:73543000-73567400	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr15:73543400-73552200	Strong transcription	Fetal Intestine Small	intestine
26	chr15:73543400-73562800	Weak transcription	Stomach Mucosa	stomach
27	chr15:73543600-73553600	Strong transcription	Sigmoid Colon	Sigmoid Colon
28	chr15:73543800-73555400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr15:73544000-73557800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr15:73544200-73555400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr15:73544400-73583000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr15:73544600-73555400	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr15:73544800-73555400	Strong transcription	Skeletal Muscle Female	skeletal muscle
34	chr15:73545400-73550400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr15:73545600-73555600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr15:73545800-73549200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr15:73546000-73548400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr15:73546000-73550400	Strong transcription	Brain Anterior Caudate	brain
39	chr15:73546000-73554000	Strong transcription	Brain Hippocampus Middle	brain
40	chr15:73546000-73555000	Strong transcription	Liver	Liver
41	chr15:73546200-73548200	Strong transcription	Esophagus	oesophagus
42	chr15:73546200-73548600	Strong transcription	Aorta	Aorta
43	chr15:73546200-73549600	Strong transcription	Fetal Muscle Leg	muscle
44	chr15:73546200-73556600	Strong transcription	Duodenum Mucosa	Duodenum
45	chr15:73546400-73549200	Strong transcription	Stomach Smooth Muscle	stomach
46	chr15:73546400-73552200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr15:73546400-73552200	Strong transcription	Fetal Stomach	stomach
48	chr15:73546600-73548400	Strong transcription	HUES48 Cell Line	embryonic stem cell
49	chr15:73546800-73548200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr15:73546800-73553600	Strong transcription	Fetal Lung	lung

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