Variant report

Variant	rs3784793
Chromosome Location	chr15:73546595-73546596
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10048053	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1023924	1.00[CHB][hapmap]
rs1038137	0.84[CHB][hapmap]
rs10438294	0.95[CEU][hapmap];0.91[CHB][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10467948	0.84[CHB][hapmap]
rs10467949	0.89[CHB][hapmap];0.82[ASN][1000 genomes]
rs11072406	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11072409	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1131854	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11632639	0.92[CHB][hapmap];0.94[JPT][hapmap]
rs11633469	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11636241	1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11639213	1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12050774	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs12050848	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12708506	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12899246	0.84[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs12902768	0.95[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12907139	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12916928	0.83[EUR][1000 genomes]
rs1479337	0.82[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs1479338	1.00[CHB][hapmap]
rs1479339	1.00[CHB][hapmap]
rs1479340	1.00[CHB][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs1564345	1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs17762516	0.88[ASN][1000 genomes]
rs17762600	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs17829830	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs17829836	0.90[ASN][1000 genomes]
rs17829957	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs1812835	0.81[CEU][hapmap]
rs1871385	0.95[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2010793	0.82[ASN][1000 genomes]
rs2046017	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.85[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2127277	1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs2127278	0.91[CHB][hapmap]
rs2169951	0.84[CHB][hapmap]
rs2194924	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2251205	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2415147	0.95[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2415148	0.92[CHB][hapmap]
rs2899784	1.00[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs34013312	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35450875	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3736510	0.95[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3743489	0.94[CEU][hapmap];0.91[CHB][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3784794	0.82[CHB][hapmap]
rs3784796	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4132535	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs4132536	0.91[CHB][hapmap]
rs4381562	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4776630	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4777582	0.84[CHB][hapmap];0.88[JPT][hapmap]
rs4777583	0.83[EUR][1000 genomes]
rs4777589	0.92[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs4777590	0.92[CHB][hapmap]
rs4777591	0.92[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs56157337	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58060856	0.87[ASN][1000 genomes]
rs62017779	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6495047	0.92[CHB][hapmap];0.87[JPT][hapmap]
rs7164894	0.84[CHB][hapmap];0.88[JPT][hapmap]
rs7169083	1.00[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs7172021	1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs7172396	0.92[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs7175329	0.92[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs747872	0.95[CEU][hapmap];0.92[CHB][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs747873	0.95[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8024575	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8026121	0.92[CHB][hapmap]
rs8026579	0.84[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs8027588	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8029106	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8035063	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8035925	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8040516	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8042700	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs922516	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs9672588	1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9806496	0.91[ASN][1000 genomes]
rs9920186	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs9972523	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525462	chr15:73349633-73563495	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73518800-73547800	Weak transcription	Left Ventricle	heart
2	chr15:73520400-73562400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr15:73520600-73579600	Weak transcription	Colon Smooth Muscle	Colon
4	chr15:73523000-73572200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr15:73523200-73547800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr15:73524200-73547000	Weak transcription	Ovary	ovary
7	chr15:73525000-73548800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr15:73525200-73547000	Weak transcription	Pancreas	Pancrea
9	chr15:73525600-73547800	Weak transcription	Gastric	stomach
10	chr15:73527000-73547000	Weak transcription	Brain Angular Gyrus	brain
11	chr15:73527000-73579400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr15:73527400-73551600	Weak transcription	Small Intestine	intestine
13	chr15:73527600-73562400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr15:73528800-73547000	Weak transcription	Lung	lung
15	chr15:73529000-73552600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr15:73529400-73547000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr15:73530800-73551200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr15:73531400-73547600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:73531600-73547600	Weak transcription	Fetal Muscle Trunk	muscle
20	chr15:73532400-73547600	Weak transcription	Fetal Brain Male	brain
21	chr15:73535200-73588000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr15:73536000-73550800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr15:73536200-73602000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr15:73536400-73559200	Strong transcription	Rectal Mucosa Donor 31	rectum
25	chr15:73536400-73566600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr15:73536800-73562400	Weak transcription	A549	lung
27	chr15:73537000-73547800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr15:73537200-73547800	Weak transcription	Fetal Brain Female	brain
29	chr15:73537600-73572200	Weak transcription	Fetal Heart	heart
30	chr15:73537800-73547600	Weak transcription	Adipose Nuclei	Adipose
31	chr15:73538000-73593400	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr15:73538200-73562600	Strong transcription	Fetal Intestine Large	intestine
33	chr15:73539200-73547000	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr15:73539600-73547600	Weak transcription	Rectal Smooth Muscle	rectum
35	chr15:73540000-73552000	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr15:73540000-73565400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr15:73540000-73584800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr15:73540800-73562400	Weak transcription	HepG2	liver
39	chr15:73541600-73550200	Weak transcription	Colonic Mucosa	Colon
40	chr15:73542200-73546800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr15:73542400-73546800	Weak transcription	Brain Cingulate Gyrus	brain
42	chr15:73542400-73547000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr15:73542400-73547000	Weak transcription	Fetal Kidney	kidney
44	chr15:73542400-73547200	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr15:73542400-73547600	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr15:73542400-73547800	Weak transcription	Brain Substantia Nigra	brain
47	chr15:73542600-73547000	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr15:73542600-73547800	Weak transcription	Brain Germinal Matrix	brain
49	chr15:73543000-73546800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr15:73543000-73567400	Strong transcription	Rectal Mucosa Donor 29	rectum

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