Variant report

Variant	rs34013312
Chromosome Location	chr15:73557237-73557238
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73557064..73558731-chr15:73570567..73572322,2	MCF-7	breast:
2	chr15:73074547..73076725-chr15:73556964..73558539,2	MCF-7	breast:
3	chr15:73556714..73560483-chr15:73561340..73564858,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000159322	Chromatin interaction
ENSG00000260898	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10048053	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1023924	0.80[ASN][1000 genomes]
rs10438294	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11072406	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11072409	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1116880	0.83[ASN][1000 genomes]
rs1131854	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11633469	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11636241	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11639213	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12050774	0.82[ASN][1000 genomes]
rs12050848	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12708506	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12902768	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12907139	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1479338	0.83[ASN][1000 genomes]
rs1479339	0.83[ASN][1000 genomes]
rs17762600	0.85[ASN][1000 genomes]
rs17829830	0.83[ASN][1000 genomes]
rs17829957	0.83[ASN][1000 genomes]
rs1812835	0.83[ASN][1000 genomes]
rs1871385	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2046017	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2194924	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2251205	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2415147	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2415148	0.93[ASN][1000 genomes]
rs35450875	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3736510	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3743489	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3784793	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3784796	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3985588	0.83[ASN][1000 genomes]
rs4381562	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4545783	0.80[ASN][1000 genomes]
rs4776630	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55646651	0.85[ASN][1000 genomes]
rs55868723	0.83[ASN][1000 genomes]
rs55939596	0.84[ASN][1000 genomes]
rs56157337	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56215298	0.83[ASN][1000 genomes]
rs56348595	0.84[ASN][1000 genomes]
rs59066156	0.83[ASN][1000 genomes]
rs62015500	0.85[ASN][1000 genomes]
rs62016851	0.83[ASN][1000 genomes]
rs62016853	0.80[ASN][1000 genomes]
rs62017774	0.86[ASN][1000 genomes]
rs62017776	0.84[ASN][1000 genomes]
rs62017779	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs74022925	0.83[ASN][1000 genomes]
rs74025262	0.83[ASN][1000 genomes]
rs747872	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs747873	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8024575	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8027588	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8029106	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8035063	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8035925	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8040516	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8042700	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9672588	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9972523	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525462	chr15:73349633-73563495	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73520400-73562400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr15:73520600-73579600	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:73523000-73572200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr15:73527000-73579400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr15:73527600-73562400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr15:73535200-73588000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr15:73536200-73602000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr15:73536400-73559200	Strong transcription	Rectal Mucosa Donor 31	rectum
9	chr15:73536400-73566600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr15:73536800-73562400	Weak transcription	A549	lung
11	chr15:73537600-73572200	Weak transcription	Fetal Heart	heart
12	chr15:73538000-73593400	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr15:73538200-73562600	Strong transcription	Fetal Intestine Large	intestine
14	chr15:73540000-73565400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr15:73540000-73584800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr15:73540800-73562400	Weak transcription	HepG2	liver
17	chr15:73543000-73567400	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr15:73543400-73562800	Weak transcription	Stomach Mucosa	stomach
19	chr15:73544000-73557800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr15:73544400-73583000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr15:73546800-73563000	Weak transcription	Right Ventricle	heart
22	chr15:73546800-73583000	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr15:73546800-73588600	Weak transcription	Spleen	Spleen
24	chr15:73547000-73559600	Strong transcription	Cortex derived primary cultured neurospheres	brain
25	chr15:73547600-73576600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr15:73547800-73584600	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr15:73548200-73558200	Weak transcription	Fetal Brain Male	brain
28	chr15:73548200-73575000	Weak transcription	Gastric	stomach
29	chr15:73548200-73575200	Weak transcription	Pancreas	Pancrea
30	chr15:73548200-73575600	Weak transcription	Esophagus	oesophagus
31	chr15:73548600-73561200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr15:73548600-73562400	Weak transcription	Aorta	Aorta
33	chr15:73549200-73562600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr15:73549200-73565400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr15:73549200-73565400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr15:73549200-73575200	Weak transcription	Brain Germinal Matrix	brain
37	chr15:73549200-73575200	Weak transcription	Lung	lung
38	chr15:73550800-73581400	Weak transcription	HMEC	breast
39	chr15:73551600-73565600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr15:73552000-73577800	Weak transcription	Psoas Muscle	Psoas
41	chr15:73552200-73561000	Weak transcription	Rectal Smooth Muscle	rectum
42	chr15:73552400-73588200	Weak transcription	Hela-S3	cervix
43	chr15:73552800-73558000	Weak transcription	Left Ventricle	heart
44	chr15:73552800-73558400	Weak transcription	Fetal Muscle Leg	muscle
45	chr15:73552800-73558600	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr15:73552800-73562600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr15:73552800-73598400	Weak transcription	Small Intestine	intestine
48	chr15:73553000-73558600	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr15:73553000-73558600	Weak transcription	Ovary	ovary
50	chr15:73553200-73558000	Weak transcription	Fetal Muscle Trunk	muscle

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