Variant report

Variant	rs62016851
Chromosome Location	chr15:73441915-73441916
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73440487..73443797-chr15:73445568..73450386,4	MCF-7	breast:

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs1023924	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1038137	0.89[ASN][1000 genomes]
rs10467948	0.86[ASN][1000 genomes]
rs11072403	0.91[ASN][1000 genomes]
rs11072406	0.89[ASN][1000 genomes]
rs1116880	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11634147	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12050658	0.80[EUR][1000 genomes]
rs12050685	0.80[EUR][1000 genomes]
rs12050774	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12902768	0.89[ASN][1000 genomes]
rs1479338	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1479339	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1479340	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1564345	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17762516	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17762600	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17829830	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17829836	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17829957	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1812835	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1871385	0.88[ASN][1000 genomes]
rs2127277	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2169951	0.86[ASN][1000 genomes]
rs2415147	0.87[ASN][1000 genomes]
rs2415148	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2899784	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34013312	0.83[ASN][1000 genomes]
rs35450875	0.87[ASN][1000 genomes]
rs3736510	0.87[ASN][1000 genomes]
rs3784801	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3985587	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3985588	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4132536	0.82[ASN][1000 genomes]
rs4545783	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4609810	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4776624	0.82[ASN][1000 genomes]
rs4777590	0.84[ASN][1000 genomes]
rs4777598	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs55646651	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55836604	0.86[ASN][1000 genomes]
rs55853625	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs55868723	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55925663	0.88[ASN][1000 genomes]
rs55939596	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56215298	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56269104	0.85[ASN][1000 genomes]
rs56348595	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56377702	0.85[ASN][1000 genomes]
rs58060856	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs59066156	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62015460	0.84[EUR][1000 genomes]
rs62015500	0.88[AMR][1000 genomes]
rs62015502	0.88[AMR][1000 genomes]
rs62016797	0.82[ASN][1000 genomes]
rs62016803	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62016805	0.82[ASN][1000 genomes]
rs62016806	0.85[ASN][1000 genomes]
rs62016809	0.86[ASN][1000 genomes]
rs62016811	0.84[ASN][1000 genomes]
rs62016814	0.86[ASN][1000 genomes]
rs62016849	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs62016853	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62016854	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62016856	0.85[EUR][1000 genomes]
rs62016857	0.80[EUR][1000 genomes]
rs62016858	0.85[EUR][1000 genomes]
rs62017774	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62017776	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7165610	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7169083	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7172021	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7172396	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs74022925	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs74025262	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs747872	0.88[ASN][1000 genomes]
rs747873	0.88[ASN][1000 genomes]
rs7497992	0.80[EUR][1000 genomes]
rs8024575	0.89[ASN][1000 genomes]
rs8026121	0.83[ASN][1000 genomes]
rs8035925	0.83[ASN][1000 genomes]
rs8042700	0.89[ASN][1000 genomes]
rs9806496	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9972347	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv904338	chr15:73313691-73483718	Enhancers Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv517966	chr15:73349633-73488753	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv525462	chr15:73349633-73563495	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv904339	chr15:73375847-73483718	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv904340	chr15:73375847-73524629	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv904341	chr15:73390790-73483718	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv904342	chr15:73390790-73524629	Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
10	nsv527236	chr15:73421239-73469535	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73396400-73444600	Weak transcription	Psoas Muscle	Psoas
2	chr15:73401400-73480200	Weak transcription	Right Ventricle	heart
3	chr15:73403000-73443400	Weak transcription	Fetal Kidney	kidney
4	chr15:73404200-73442600	Weak transcription	Left Ventricle	heart
5	chr15:73408000-73443400	Weak transcription	Adipose Nuclei	Adipose
6	chr15:73413600-73446400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr15:73414200-73445600	Weak transcription	Brain Substantia Nigra	brain
8	chr15:73414400-73458200	Weak transcription	Colonic Mucosa	Colon
9	chr15:73415400-73446600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr15:73416000-73453200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr15:73416600-73444600	Weak transcription	Fetal Muscle Leg	muscle
12	chr15:73416600-73444600	Weak transcription	Lung	lung
13	chr15:73416800-73448800	Weak transcription	Ovary	ovary
14	chr15:73417000-73443000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr15:73421000-73443200	Weak transcription	Brain Angular Gyrus	brain
16	chr15:73423400-73445400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:73423400-73448800	Weak transcription	Pancreas	Pancrea
18	chr15:73423600-73443200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr15:73423600-73444600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr15:73424200-73449200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr15:73425200-73447200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr15:73429000-73456600	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr15:73429200-73449200	Weak transcription	Gastric	stomach
24	chr15:73429400-73447200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr15:73430200-73466600	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr15:73431400-73443000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr15:73431800-73453800	Weak transcription	Rectal Smooth Muscle	rectum
28	chr15:73432600-73448600	Weak transcription	Fetal Brain Male	brain
29	chr15:73435000-73444600	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr15:73435600-73443200	Weak transcription	Duodenum Mucosa	Duodenum
31	chr15:73435600-73447200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr15:73435800-73448800	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr15:73436000-73443200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr15:73436000-73444600	Weak transcription	Fetal Stomach	stomach
35	chr15:73436000-73446400	Weak transcription	Liver	Liver
36	chr15:73436200-73443800	Weak transcription	Fetal Intestine Small	intestine
37	chr15:73436800-73443000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr15:73438800-73445000	Weak transcription	Fetal Lung	lung
39	chr15:73439600-73442200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr15:73439600-73444200	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr15:73439600-73446600	Weak transcription	Brain Anterior Caudate	brain
42	chr15:73439800-73443200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr15:73440000-73443200	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr15:73441200-73445800	Strong transcription	Fetal Intestine Large	intestine
45	chr15:73441600-73443200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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