Variant report

Variant	rs35450875
Chromosome Location	chr15:73545286-73545287
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10048053	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1023924	0.84[ASN][1000 genomes]
rs10438294	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11072406	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11072409	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1116880	0.88[ASN][1000 genomes]
rs1131854	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11633469	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11636241	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11639213	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12050774	0.86[ASN][1000 genomes]
rs12050848	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12708506	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12899246	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12902768	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12907139	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1479338	0.87[ASN][1000 genomes]
rs1479339	0.88[ASN][1000 genomes]
rs17762600	0.89[ASN][1000 genomes]
rs17829830	0.88[ASN][1000 genomes]
rs17829957	0.88[ASN][1000 genomes]
rs1812835	0.88[ASN][1000 genomes]
rs1871385	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2046017	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2194924	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2251205	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2415147	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2415148	0.97[ASN][1000 genomes]
rs34013312	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35060813	0.82[EUR][1000 genomes]
rs3736510	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3743489	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3784793	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3784796	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3985588	0.88[ASN][1000 genomes]
rs4381562	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4545783	0.84[ASN][1000 genomes]
rs4776630	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55646651	0.89[ASN][1000 genomes]
rs55868723	0.88[ASN][1000 genomes]
rs55939596	0.89[ASN][1000 genomes]
rs56157337	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56215298	0.88[ASN][1000 genomes]
rs56348595	0.88[ASN][1000 genomes]
rs59066156	0.87[ASN][1000 genomes]
rs62015500	0.81[ASN][1000 genomes]
rs62016849	0.84[ASN][1000 genomes]
rs62016851	0.87[ASN][1000 genomes]
rs62016853	0.84[ASN][1000 genomes]
rs62016854	0.81[ASN][1000 genomes]
rs62017774	0.90[ASN][1000 genomes]
rs62017776	0.89[ASN][1000 genomes]
rs62017779	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs74022925	0.88[ASN][1000 genomes]
rs74025262	0.88[ASN][1000 genomes]
rs747872	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs747873	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8024575	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8027588	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8029106	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8035063	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8035925	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8040516	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8042700	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9672588	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9972523	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525462	chr15:73349633-73563495	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73518800-73546200	Weak transcription	Psoas Muscle	Psoas
2	chr15:73518800-73547800	Weak transcription	Left Ventricle	heart
3	chr15:73520400-73562400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr15:73520600-73579600	Weak transcription	Colon Smooth Muscle	Colon
5	chr15:73523000-73572200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr15:73523200-73547800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr15:73524200-73546200	Weak transcription	Esophagus	oesophagus
8	chr15:73524200-73547000	Weak transcription	Ovary	ovary
9	chr15:73525000-73548800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr15:73525200-73546200	Weak transcription	Fetal Muscle Leg	muscle
11	chr15:73525200-73547000	Weak transcription	Pancreas	Pancrea
12	chr15:73525600-73547800	Weak transcription	Gastric	stomach
13	chr15:73527000-73547000	Weak transcription	Brain Angular Gyrus	brain
14	chr15:73527000-73579400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr15:73527400-73551600	Weak transcription	Small Intestine	intestine
16	chr15:73527600-73562400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr15:73528800-73547000	Weak transcription	Lung	lung
18	chr15:73529000-73552600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr15:73529400-73547000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr15:73529600-73546000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr15:73530800-73546000	Weak transcription	Liver	Liver
22	chr15:73530800-73551200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr15:73531400-73547600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr15:73531600-73547600	Weak transcription	Fetal Muscle Trunk	muscle
25	chr15:73532400-73547600	Weak transcription	Fetal Brain Male	brain
26	chr15:73535200-73588000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr15:73536000-73550800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr15:73536200-73602000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr15:73536400-73559200	Strong transcription	Rectal Mucosa Donor 31	rectum
30	chr15:73536400-73566600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr15:73536800-73562400	Weak transcription	A549	lung
32	chr15:73537000-73547800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr15:73537200-73545800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr15:73537200-73547800	Weak transcription	Fetal Brain Female	brain
35	chr15:73537600-73572200	Weak transcription	Fetal Heart	heart
36	chr15:73537800-73546400	Weak transcription	Stomach Smooth Muscle	stomach
37	chr15:73537800-73547600	Weak transcription	Adipose Nuclei	Adipose
38	chr15:73538000-73593400	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr15:73538200-73562600	Strong transcription	Fetal Intestine Large	intestine
40	chr15:73539200-73547000	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr15:73539400-73546200	Weak transcription	Aorta	Aorta
42	chr15:73539600-73547600	Weak transcription	Rectal Smooth Muscle	rectum
43	chr15:73540000-73552000	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr15:73540000-73565400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr15:73540000-73584800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr15:73540400-73546200	Weak transcription	Fetal Stomach	stomach
47	chr15:73540800-73546000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr15:73540800-73562400	Weak transcription	HepG2	liver
49	chr15:73541600-73550200	Weak transcription	Colonic Mucosa	Colon
50	chr15:73541800-73546000	Weak transcription	Brain Hippocampus Middle	brain

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