Variant report

Variant	rs2194924
Chromosome Location	chr15:73567837-73567838
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73567230..73569209-chr15:73616607..73619389,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10048053	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10438294	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11072406	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11072409	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1131854	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11633469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11636241	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11639213	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12050848	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12708506	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12902768	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12907139	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1871385	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2046017	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2251205	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2415147	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34013312	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35450875	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3736510	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3743489	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3784793	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3784796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4381562	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4776630	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56157337	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62017779	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs747872	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs747873	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8024575	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8027588	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8029106	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8035063	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8035925	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8040516	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8042700	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9672588	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9972523	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73520600-73579600	Weak transcription	Colon Smooth Muscle	Colon
2	chr15:73523000-73572200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr15:73527000-73579400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr15:73535200-73588000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:73536200-73602000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr15:73537600-73572200	Weak transcription	Fetal Heart	heart
7	chr15:73538000-73593400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr15:73540000-73584800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr15:73544400-73583000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr15:73546800-73583000	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr15:73546800-73588600	Weak transcription	Spleen	Spleen
12	chr15:73547600-73576600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr15:73547800-73584600	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr15:73548200-73575000	Weak transcription	Gastric	stomach
15	chr15:73548200-73575200	Weak transcription	Pancreas	Pancrea
16	chr15:73548200-73575600	Weak transcription	Esophagus	oesophagus
17	chr15:73549200-73575200	Weak transcription	Brain Germinal Matrix	brain
18	chr15:73549200-73575200	Weak transcription	Lung	lung
19	chr15:73550800-73581400	Weak transcription	HMEC	breast
20	chr15:73552000-73577800	Weak transcription	Psoas Muscle	Psoas
21	chr15:73552400-73588200	Weak transcription	Hela-S3	cervix
22	chr15:73552800-73598400	Weak transcription	Small Intestine	intestine
23	chr15:73553800-73581200	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr15:73555000-73570600	Weak transcription	Liver	Liver
25	chr15:73555200-73575600	Weak transcription	Colonic Mucosa	Colon
26	chr15:73560800-73597200	Strong transcription	Rectal Mucosa Donor 31	rectum
27	chr15:73561600-73570400	Weak transcription	Left Ventricle	heart
28	chr15:73562800-73568000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr15:73562800-73583000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr15:73563000-73568200	Weak transcription	HSMMtube	muscle
31	chr15:73563000-73570800	Weak transcription	Stomach Smooth Muscle	stomach
32	chr15:73563000-73574600	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr15:73563200-73568600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr15:73563200-73570200	Weak transcription	Fetal Kidney	kidney
35	chr15:73563200-73578000	Weak transcription	Aorta	Aorta
36	chr15:73563200-73578800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr15:73563200-73598600	Weak transcription	Stomach Mucosa	stomach
38	chr15:73563400-73570400	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr15:73563400-73574200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr15:73563400-73575000	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr15:73563400-73575000	Weak transcription	Fetal Muscle Trunk	muscle
42	chr15:73563400-73575200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr15:73563400-73575400	Weak transcription	Adipose Nuclei	Adipose
44	chr15:73563400-73575600	Weak transcription	Right Ventricle	heart
45	chr15:73563400-73581000	Weak transcription	Fetal Brain Male	brain
46	chr15:73563400-73581200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr15:73563400-73585600	Strong transcription	Fetal Intestine Large	intestine
48	chr15:73563600-73570400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr15:73563600-73574800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr15:73563600-73578800	Weak transcription	A549	lung

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