Variant report

Variant	rs747873
Chromosome Location	chr15:73528937-73528938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73523932..73526335-chr15:73528553..73530917,2	K562	blood:

Extended variants
information (count: 96 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10048053	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1023924	0.87[CHB][hapmap];1.00[CHD][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs1038137	0.80[CHB][hapmap]
rs10438294	0.91[ASW][hapmap];0.96[CEU][hapmap];0.93[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];0.80[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10467948	0.80[CHB][hapmap]
rs10467949	0.86[CHD][hapmap];0.80[GIH][hapmap]
rs11072403	0.81[ASN][1000 genomes]
rs11072406	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11072409	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1116880	0.89[ASN][1000 genomes]
rs1131854	0.89[CEU][hapmap];0.81[CHB][hapmap];0.89[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11632639	0.82[CHB][hapmap]
rs11633469	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11636241	0.89[CEU][hapmap];0.81[CHB][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11639213	0.88[CEU][hapmap];0.81[CHB][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12050774	0.87[CHB][hapmap];0.97[CHD][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs12050848	0.87[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12708506	0.88[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12899246	0.82[CHB][hapmap];0.81[AMR][1000 genomes]
rs12902768	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12907139	0.89[CEU][hapmap];0.87[CHB][hapmap];0.80[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13379875	0.80[CHB][hapmap];0.91[CHD][hapmap]
rs1479338	0.87[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs1479339	0.87[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs1479340	0.86[CHD][hapmap];0.81[JPT][hapmap]
rs1564345	0.86[CHD][hapmap]
rs17762600	0.87[CHB][hapmap];1.00[CHD][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs17829830	0.87[CHB][hapmap];1.00[CHD][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs17829957	0.87[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs1812835	0.81[CEU][hapmap];0.89[ASN][1000 genomes]
rs1871385	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2046017	0.89[CEU][hapmap];0.88[CHB][hapmap];0.86[CHD][hapmap];0.89[GIH][hapmap];0.88[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2127277	0.86[CHD][hapmap]
rs2169951	0.80[CHB][hapmap]
rs2194924	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2251205	0.84[CEU][hapmap];0.88[CHB][hapmap];0.86[CHD][hapmap];0.89[GIH][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2252725	0.81[TSI][hapmap]
rs2415147	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2415148	0.87[CHB][hapmap];0.87[JPT][hapmap];0.95[ASN][1000 genomes]
rs34013312	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35060813	0.81[EUR][1000 genomes]
rs35450875	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3736510	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3743489	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3784793	0.95[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3784796	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3985588	0.89[ASN][1000 genomes]
rs4132535	0.82[CHB][hapmap];0.83[CHD][hapmap];0.80[GIH][hapmap]
rs4132536	0.80[CHB][hapmap];0.91[CHD][hapmap]
rs4381562	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4545783	0.87[ASN][1000 genomes]
rs4776630	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4777582	0.82[CHB][hapmap]
rs4777589	0.82[CHB][hapmap];0.86[CHD][hapmap]
rs4777590	0.80[CHB][hapmap];1.00[CHD][hapmap]
rs4777591	0.82[CHB][hapmap]
rs489531	0.81[TSI][hapmap]
rs55646651	0.90[ASN][1000 genomes]
rs55868723	0.89[ASN][1000 genomes]
rs55925663	0.81[ASN][1000 genomes]
rs55939596	0.89[ASN][1000 genomes]
rs56157337	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56215298	0.89[ASN][1000 genomes]
rs56348595	0.89[ASN][1000 genomes]
rs59066156	0.88[ASN][1000 genomes]
rs62015500	0.80[ASN][1000 genomes]
rs62016849	0.86[ASN][1000 genomes]
rs62016851	0.88[ASN][1000 genomes]
rs62016853	0.85[ASN][1000 genomes]
rs62016854	0.82[ASN][1000 genomes]
rs62017774	0.91[ASN][1000 genomes]
rs62017776	0.89[ASN][1000 genomes]
rs62017779	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6495047	0.82[CHB][hapmap]
rs7164894	0.82[CHB][hapmap]
rs7169083	0.81[JPT][hapmap]
rs7172021	0.86[CHD][hapmap]
rs7175329	0.82[CHB][hapmap];0.86[CHD][hapmap];0.82[GIH][hapmap];0.86[MEX][hapmap]
rs74022925	0.89[ASN][1000 genomes]
rs74025262	0.89[ASN][1000 genomes]
rs747872	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8024575	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8026121	0.80[CHB][hapmap]
rs8026579	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs8027588	0.89[CEU][hapmap];0.81[CHB][hapmap];0.89[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8029106	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8035063	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8035925	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8040516	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8042700	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs922516	0.82[CHB][hapmap];0.86[CHD][hapmap]
rs9672588	0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9920186	0.82[CHB][hapmap];0.83[CHD][hapmap];0.80[GIH][hapmap]
rs9972523	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525462	chr15:73349633-73563495	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs747873	CYP1A2	cis	parietal	SCAN

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73497800-73541800	Weak transcription	Fetal Kidney	kidney
2	chr15:73518200-73540800	Weak transcription	Colonic Mucosa	Colon
3	chr15:73518400-73531800	Weak transcription	Aorta	Aorta
4	chr15:73518600-73529800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr15:73518600-73534000	Weak transcription	Right Ventricle	heart
6	chr15:73518800-73546200	Weak transcription	Psoas Muscle	Psoas
7	chr15:73518800-73547800	Weak transcription	Left Ventricle	heart
8	chr15:73520400-73562400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr15:73520600-73579600	Weak transcription	Colon Smooth Muscle	Colon
10	chr15:73520800-73536400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr15:73523000-73572200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr15:73523200-73547800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr15:73523800-73530200	Weak transcription	Adipose Nuclei	Adipose
14	chr15:73524200-73529000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr15:73524200-73536600	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr15:73524200-73546200	Weak transcription	Esophagus	oesophagus
17	chr15:73524200-73547000	Weak transcription	Ovary	ovary
18	chr15:73524400-73531400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr15:73524400-73542200	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr15:73524600-73530200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr15:73524800-73538400	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr15:73525000-73548800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr15:73525200-73530600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr15:73525200-73546200	Weak transcription	Fetal Muscle Leg	muscle
25	chr15:73525200-73547000	Weak transcription	Pancreas	Pancrea
26	chr15:73525400-73530400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr15:73525400-73532000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr15:73525600-73547800	Weak transcription	Gastric	stomach
29	chr15:73526400-73530800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr15:73526400-73531800	Weak transcription	Fetal Brain Female	brain
31	chr15:73526600-73541400	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr15:73526800-73530200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr15:73527000-73531800	Weak transcription	Fetal Brain Male	brain
34	chr15:73527000-73536600	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr15:73527000-73547000	Weak transcription	Brain Angular Gyrus	brain
36	chr15:73527000-73579400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr15:73527400-73530000	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr15:73527400-73542000	Weak transcription	Brain Germinal Matrix	brain
39	chr15:73527400-73551600	Weak transcription	Small Intestine	intestine
40	chr15:73527600-73538400	Weak transcription	Brain Cingulate Gyrus	brain
41	chr15:73527600-73562400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr15:73527800-73530200	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr15:73528000-73530800	Strong transcription	Rectal Mucosa Donor 31	rectum
44	chr15:73528200-73529000	Genic enhancers	Brain Substantia Nigra	brain
45	chr15:73528200-73529800	Strong transcription	Duodenum Mucosa	Duodenum
46	chr15:73528200-73538000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr15:73528400-73529400	Strong transcription	Fetal Intestine Small	intestine
48	chr15:73528400-73529600	Strong transcription	Fetal Lung	lung
49	chr15:73528400-73530200	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr15:73528600-73529000	Strong transcription	Sigmoid Colon	Sigmoid Colon

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