Variant report

Variant	rs3736510
Chromosome Location	chr15:73541513-73541514
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10048053	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1023924	0.88[CHB][hapmap];1.00[CHD][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs1038137	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs10438294	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10467948	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs10467949	0.86[CHD][hapmap];0.87[GIH][hapmap];0.80[TSI][hapmap]
rs11072406	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11072409	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1116880	0.88[ASN][1000 genomes]
rs1131854	0.92[CEU][hapmap];0.82[CHB][hapmap];0.91[GIH][hapmap];0.95[MEX][hapmap];0.96[TSI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11632639	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs11633469	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11636241	0.92[CEU][hapmap];0.82[CHB][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11639213	0.92[CEU][hapmap];0.82[CHB][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12050774	0.88[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs12050848	0.91[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12708506	0.92[CEU][hapmap];0.82[CHB][hapmap];0.88[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12899246	0.83[CHB][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12902768	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12907139	0.92[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13379875	0.81[CHB][hapmap];0.91[CHD][hapmap]
rs1479337	0.80[CHB][hapmap]
rs1479338	0.82[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs1479339	0.88[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs1479340	0.86[CHD][hapmap];0.87[JPT][hapmap]
rs1564345	0.86[CHD][hapmap];0.81[JPT][hapmap]
rs17762600	0.88[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs17829830	0.88[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs17829957	0.88[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs1812835	0.85[CEU][hapmap];0.88[ASN][1000 genomes]
rs1871385	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2046017	0.92[CEU][hapmap];0.89[CHB][hapmap];0.86[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];0.95[MEX][hapmap];0.93[MKK][hapmap];0.96[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2127277	0.85[CHD][hapmap];0.81[JPT][hapmap]
rs2169951	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs2194924	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2251205	0.88[CEU][hapmap];0.89[CHB][hapmap];0.86[CHD][hapmap];0.91[GIH][hapmap];0.88[JPT][hapmap];0.95[MEX][hapmap];0.92[MKK][hapmap];0.96[TSI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2252725	0.83[MEX][hapmap];0.83[TSI][hapmap]
rs2415147	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2415148	0.88[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs2899784	0.87[JPT][hapmap]
rs34013312	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35060813	0.82[EUR][1000 genomes]
rs35450875	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3743489	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3784793	0.95[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3784796	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3985588	0.88[ASN][1000 genomes]
rs4132535	0.83[CHB][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap]
rs4132536	0.80[CHB][hapmap];0.91[CHD][hapmap];0.81[JPT][hapmap]
rs4381562	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4545783	0.84[ASN][1000 genomes]
rs4776630	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4777582	0.83[CHB][hapmap]
rs4777589	0.83[CHB][hapmap];0.86[CHD][hapmap];0.84[GIH][hapmap]
rs4777590	0.81[CHB][hapmap];1.00[CHD][hapmap];0.81[JPT][hapmap]
rs4777591	0.83[CHB][hapmap]
rs489531	0.83[MEX][hapmap];0.83[TSI][hapmap]
rs55646651	0.89[ASN][1000 genomes]
rs55868723	0.88[ASN][1000 genomes]
rs55939596	0.89[ASN][1000 genomes]
rs56157337	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56215298	0.88[ASN][1000 genomes]
rs56348595	0.88[ASN][1000 genomes]
rs59066156	0.87[ASN][1000 genomes]
rs62015500	0.81[ASN][1000 genomes]
rs62016849	0.84[ASN][1000 genomes]
rs62016851	0.87[ASN][1000 genomes]
rs62016853	0.84[ASN][1000 genomes]
rs62016854	0.81[ASN][1000 genomes]
rs62017774	0.90[ASN][1000 genomes]
rs62017776	0.89[ASN][1000 genomes]
rs62017779	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6495047	0.83[CHB][hapmap]
rs7164894	0.83[CHB][hapmap]
rs7169083	0.87[JPT][hapmap]
rs7172021	0.86[CHD][hapmap];0.81[JPT][hapmap]
rs7172396	0.81[JPT][hapmap]
rs7175329	0.83[CHB][hapmap];0.86[CHD][hapmap];0.89[GIH][hapmap];0.91[MEX][hapmap]
rs74022925	0.88[ASN][1000 genomes]
rs74025262	0.88[ASN][1000 genomes]
rs747872	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs747873	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8024575	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8026121	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs8026579	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs8027588	0.92[CEU][hapmap];0.82[CHB][hapmap];0.91[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8029106	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8035063	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8035925	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8040516	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8042700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs922516	0.83[CHB][hapmap];0.86[CHD][hapmap];0.84[GIH][hapmap]
rs9672588	0.92[CEU][hapmap];0.81[CHB][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9920186	0.83[CHB][hapmap];0.82[CHD][hapmap];0.87[GIH][hapmap]
rs9972523	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525462	chr15:73349633-73563495	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73497800-73541800	Weak transcription	Fetal Kidney	kidney
2	chr15:73518800-73546200	Weak transcription	Psoas Muscle	Psoas
3	chr15:73518800-73547800	Weak transcription	Left Ventricle	heart
4	chr15:73520400-73562400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr15:73520600-73579600	Weak transcription	Colon Smooth Muscle	Colon
6	chr15:73523000-73572200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr15:73523200-73547800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:73524200-73546200	Weak transcription	Esophagus	oesophagus
9	chr15:73524200-73547000	Weak transcription	Ovary	ovary
10	chr15:73524400-73542200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr15:73525000-73548800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr15:73525200-73546200	Weak transcription	Fetal Muscle Leg	muscle
13	chr15:73525200-73547000	Weak transcription	Pancreas	Pancrea
14	chr15:73525600-73547800	Weak transcription	Gastric	stomach
15	chr15:73527000-73547000	Weak transcription	Brain Angular Gyrus	brain
16	chr15:73527000-73579400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr15:73527400-73542000	Weak transcription	Brain Germinal Matrix	brain
18	chr15:73527400-73551600	Weak transcription	Small Intestine	intestine
19	chr15:73527600-73562400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr15:73528800-73547000	Weak transcription	Lung	lung
21	chr15:73529000-73552600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr15:73529400-73547000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr15:73529600-73546000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr15:73529800-73542000	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr15:73530800-73541600	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr15:73530800-73546000	Weak transcription	Liver	Liver
27	chr15:73530800-73551200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr15:73531400-73547600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr15:73531600-73547600	Weak transcription	Fetal Muscle Trunk	muscle
30	chr15:73532400-73547600	Weak transcription	Fetal Brain Male	brain
31	chr15:73535200-73588000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr15:73535800-73543000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr15:73536000-73550800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr15:73536200-73544400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr15:73536200-73602000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr15:73536400-73559200	Strong transcription	Rectal Mucosa Donor 31	rectum
37	chr15:73536400-73566600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr15:73536600-73543000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr15:73536800-73543000	Strong transcription	Duodenum Mucosa	Duodenum
40	chr15:73536800-73562400	Weak transcription	A549	lung
41	chr15:73537000-73547800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr15:73537200-73545800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr15:73537200-73547800	Weak transcription	Fetal Brain Female	brain
44	chr15:73537600-73572200	Weak transcription	Fetal Heart	heart
45	chr15:73537800-73546400	Weak transcription	Stomach Smooth Muscle	stomach
46	chr15:73537800-73547600	Weak transcription	Adipose Nuclei	Adipose
47	chr15:73538000-73593400	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr15:73538200-73543200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr15:73538200-73562600	Strong transcription	Fetal Intestine Large	intestine
50	chr15:73538400-73541800	Strong transcription	Brain Hippocampus Middle	brain

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