Variant report

Variant	rs11632639
Chromosome Location	chr15:73349633-73349634
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73074430..73076161-chr15:73348280..73350675,2	MCF-7	breast:
2	chr15:73348449..73350291-chr15:73354149..73355949,2	MCF-7	breast:
3	chr15:73095998..73099016-chr15:73347374..73350745,4	MCF-7	breast:
4	chr15:73343741..73345939-chr15:73347113..73349925,2	K562	blood:
5	chr15:73342947..73345241-chr15:73347113..73349760,2	K562	blood:

Variant related genes	Relation type
ENSG00000159322	Chromatin interaction
ENSG00000260898	Chromatin interaction
ENSG00000067141	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1038137	0.83[JPT][hapmap]
rs10467948	0.83[JPT][hapmap]
rs10467949	0.81[ASW][hapmap];0.85[CEU][hapmap];0.93[CHB][hapmap];0.85[CHD][hapmap];0.94[JPT][hapmap];0.87[LWK][hapmap];0.98[MKK][hapmap];0.84[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11856922	0.98[ASN][1000 genomes]
rs12050848	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs12899246	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12902768	0.83[CHB][hapmap]
rs12907139	0.94[CHB][hapmap];0.93[JPT][hapmap]
rs12916928	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1479337	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1479340	0.83[CHB][hapmap];0.85[CHD][hapmap];0.83[JPT][hapmap]
rs1564345	0.83[CHB][hapmap];0.85[CHD][hapmap];0.88[JPT][hapmap]
rs1871385	0.83[CHB][hapmap]
rs2010793	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2046017	0.94[CHB][hapmap];0.85[CHD][hapmap];0.88[JPT][hapmap]
rs2127277	0.83[CHB][hapmap];0.85[CHD][hapmap];0.88[JPT][hapmap]
rs2169951	0.83[JPT][hapmap]
rs2415147	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs28481558	0.99[ASN][1000 genomes]
rs28743094	0.99[ASN][1000 genomes]
rs28842482	0.96[ASN][1000 genomes]
rs2899784	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs35060813	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3736510	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs3784793	0.92[CHB][hapmap];0.94[JPT][hapmap]
rs4132535	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4132536	0.83[JPT][hapmap]
rs4777582	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4777583	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4777589	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4777590	0.83[JPT][hapmap]
rs4777591	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6416501	0.98[ASN][1000 genomes]
rs6416502	0.98[ASN][1000 genomes]
rs6495047	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7164894	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7168555	0.85[CHB][hapmap]
rs7169083	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs7172021	0.83[CHB][hapmap];0.85[CHD][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs7172396	0.82[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs7173142	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7175329	0.92[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.98[MKK][hapmap];0.89[TSI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs747872	0.83[CHB][hapmap]
rs747873	0.82[CHB][hapmap]
rs7495458	0.98[ASN][1000 genomes]
rs8026121	0.83[JPT][hapmap]
rs8026579	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs8042700	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs922516	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9920186	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv482421	chr15:73279141-73426897	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv904338	chr15:73313691-73483718	Enhancers Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv517966	chr15:73349633-73488753	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv525462	chr15:73349633-73563495	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73346400-73350400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr15:73346400-73350800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:73346400-73353400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr15:73346400-73355000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr15:73346400-73355400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr15:73346800-73353200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr15:73347000-73358800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr15:73347200-73349800	Enhancers	Brain Angular Gyrus	brain
9	chr15:73347200-73350600	Weak transcription	Liver	Liver
10	chr15:73347200-73352600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:73347200-73354400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr15:73347600-73350400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr15:73347600-73350600	Weak transcription	Fetal Intestine Small	intestine
14	chr15:73347600-73351000	Enhancers	Fetal Brain Male	brain
15	chr15:73347600-73354200	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr15:73348000-73351200	Weak transcription	Fetal Kidney	kidney
17	chr15:73348200-73355600	Weak transcription	Fetal Lung	lung
18	chr15:73348400-73350600	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr15:73348600-73350600	Weak transcription	Small Intestine	intestine
20	chr15:73348600-73353000	Weak transcription	Aorta	Aorta
21	chr15:73348600-73353400	Weak transcription	Duodenum Mucosa	Duodenum
22	chr15:73348600-73353600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr15:73348600-73355000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr15:73348800-73353200	Weak transcription	Fetal Intestine Large	intestine
25	chr15:73349000-73353600	Weak transcription	Psoas Muscle	Psoas
26	chr15:73349200-73353800	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr15:73349200-73355000	Weak transcription	Brain Cingulate Gyrus	brain
28	chr15:73349200-73355000	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr15:73349400-73353200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr15:73349400-73353400	Weak transcription	Brain Hippocampus Middle	brain
31	chr15:73349400-73353400	Weak transcription	Fetal Brain Female	brain
32	chr15:73349400-73353600	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr15:73349400-73354400	Weak transcription	Brain Anterior Caudate	brain
34	chr15:73349400-73367000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr15:73349600-73350600	Weak transcription	Brain Substantia Nigra	brain

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