Variant report

Variant	rs35060813
Chromosome Location	chr15:73368233-73368234
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73344714..73346564-chr15:73366331..73368707,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067141	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10467949	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11072406	0.83[EUR][1000 genomes]
rs11632639	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11856922	1.00[ASN][1000 genomes]
rs12899246	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12902768	0.83[EUR][1000 genomes]
rs12916928	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1479337	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1871385	0.83[EUR][1000 genomes]
rs2010793	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28481558	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs28743094	0.99[ASN][1000 genomes]
rs28842482	0.96[ASN][1000 genomes]
rs35450875	0.82[EUR][1000 genomes]
rs3736510	0.82[EUR][1000 genomes]
rs4132535	0.99[ASN][1000 genomes]
rs4777582	0.99[ASN][1000 genomes]
rs4777583	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4777589	0.95[ASN][1000 genomes]
rs4777591	0.94[ASN][1000 genomes]
rs6416501	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6416502	1.00[ASN][1000 genomes]
rs6495047	1.00[ASN][1000 genomes]
rs7164894	0.95[ASN][1000 genomes]
rs7172021	0.81[ASN][1000 genomes]
rs7172396	0.81[ASN][1000 genomes]
rs7173142	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7175329	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs747872	0.83[EUR][1000 genomes]
rs747873	0.81[EUR][1000 genomes]
rs7495458	1.00[ASN][1000 genomes]
rs8024575	0.83[EUR][1000 genomes]
rs8026579	0.94[ASN][1000 genomes]
rs8042700	0.83[EUR][1000 genomes]
rs922516	0.90[ASN][1000 genomes]
rs9920186	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv482421	chr15:73279141-73426897	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv904338	chr15:73313691-73483718	Enhancers Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv517966	chr15:73349633-73488753	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv525462	chr15:73349633-73563495	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73359200-73370600	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr15:73361000-73372400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr15:73363400-73370200	Weak transcription	Ovary	ovary
4	chr15:73365000-73368400	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr15:73365000-73374000	Enhancers	Brain Angular Gyrus	brain
6	chr15:73365400-73368800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr15:73365800-73370600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr15:73366000-73368400	Enhancers	Fetal Brain Male	brain
9	chr15:73366000-73370800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr15:73366200-73368400	Enhancers	Hela-S3	cervix
11	chr15:73366200-73369200	Enhancers	Brain Cingulate Gyrus	brain
12	chr15:73366600-73370200	Weak transcription	Stomach Mucosa	stomach
13	chr15:73366800-73370600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr15:73367000-73369200	Enhancers	Psoas Muscle	Psoas
15	chr15:73367000-73371800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr15:73367200-73370000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr15:73367200-73370200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr15:73367200-73370200	Weak transcription	Gastric	stomach
19	chr15:73367200-73370200	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr15:73367200-73370800	Weak transcription	Fetal Lung	lung
21	chr15:73367400-73368400	Flanking Active TSS	Brain Anterior Caudate	brain
22	chr15:73367400-73368600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr15:73367400-73368800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr15:73367600-73368400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr15:73367600-73368400	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr15:73367600-73368600	Enhancers	Aorta	Aorta
27	chr15:73367800-73368800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
28	chr15:73367800-73368800	Enhancers	Fetal Brain Female	brain
29	chr15:73367800-73370000	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr15:73367800-73370800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr15:73368000-73368800	Weak transcription	Rectal Smooth Muscle	rectum
32	chr15:73368000-73370200	Weak transcription	Small Intestine	intestine
33	chr15:73368000-73370600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr15:73368000-73370800	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr15:73368000-73370800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr15:73368000-73370800	Weak transcription	Fetal Intestine Small	intestine
37	chr15:73368000-73371000	Weak transcription	Fetal Intestine Large	intestine
38	chr15:73368200-73368400	Enhancers	NHDF-Ad	bronchial
39	chr15:73368200-73368600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr15:73368200-73369200	Enhancers	Brain Hippocampus Middle	brain
41	chr15:73368200-73369200	Enhancers	Pancreatic Islets	Pancreatic Islet
42	chr15:73368200-73370000	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr15:73368200-73370000	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr15:73368200-73370200	Weak transcription	Colon Smooth Muscle	Colon
45	chr15:73368200-73370800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr15:73368200-73370800	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr15:73368200-73370800	Weak transcription	NHEK	skin
48	chr15:73368200-73375600	Enhancers	Brain Substantia Nigra	brain
49	chr15:73368200-73381000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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