Variant report

Variant	rs62015460
Chromosome Location	chr15:73518606-73518607
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73518381..73521870-chr15:73524452..73526863,3	K562	blood:
2	chr15:73517252..73519302-chr15:73531037..73533501,2	MCF-7	breast:
3	chr15:73518381..73521603-chr15:73524397..73526863,3	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1116880	0.97[EUR][1000 genomes]
rs11634084	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11634147	0.84[EUR][1000 genomes]
rs12050658	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12050685	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12050774	0.92[EUR][1000 genomes]
rs1479338	0.92[EUR][1000 genomes]
rs1479339	0.92[EUR][1000 genomes]
rs1479340	0.84[EUR][1000 genomes]
rs1564345	0.85[EUR][1000 genomes]
rs17762146	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17762516	0.90[EUR][1000 genomes]
rs17762600	0.92[EUR][1000 genomes]
rs17829830	0.92[EUR][1000 genomes]
rs17829836	0.83[EUR][1000 genomes]
rs17829957	0.92[EUR][1000 genomes]
rs1812835	0.94[EUR][1000 genomes]
rs1964543	0.83[AFR][1000 genomes]
rs2127277	0.83[EUR][1000 genomes]
rs2415148	0.90[EUR][1000 genomes]
rs2899784	0.84[EUR][1000 genomes]
rs3784801	0.84[EUR][1000 genomes]
rs3985587	0.84[EUR][1000 genomes]
rs3985588	0.86[EUR][1000 genomes]
rs4777598	0.84[EUR][1000 genomes]
rs55646651	0.92[EUR][1000 genomes]
rs55853625	0.84[EUR][1000 genomes]
rs55868723	0.97[EUR][1000 genomes]
rs55939596	0.94[EUR][1000 genomes]
rs56215298	0.94[EUR][1000 genomes]
rs56348595	0.94[EUR][1000 genomes]
rs58060856	0.84[EUR][1000 genomes]
rs59066156	0.88[EUR][1000 genomes]
rs62015484	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62015499	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62015500	0.90[EUR][1000 genomes]
rs62015502	0.89[EUR][1000 genomes]
rs62015504	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62016808	0.83[AFR][1000 genomes]
rs62016813	0.83[AFR][1000 genomes]
rs62016850	0.90[ASN][1000 genomes]
rs62016851	0.84[EUR][1000 genomes]
rs62016853	0.92[EUR][1000 genomes]
rs62016854	0.91[EUR][1000 genomes]
rs62016856	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62016857	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62016858	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62017774	0.94[EUR][1000 genomes]
rs62017776	0.94[EUR][1000 genomes]
rs7172021	0.84[EUR][1000 genomes]
rs7172396	0.84[EUR][1000 genomes]
rs74022925	0.94[EUR][1000 genomes]
rs74025262	0.92[EUR][1000 genomes]
rs7497992	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9806496	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525462	chr15:73349633-73563495	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv904340	chr15:73375847-73524629	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv904342	chr15:73390790-73524629	Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73474200-73523800	Weak transcription	Esophagus	oesophagus
2	chr15:73487200-73519800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr15:73493400-73528600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr15:73497800-73541800	Weak transcription	Fetal Kidney	kidney
5	chr15:73509400-73525000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr15:73509600-73528800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:73515600-73520000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr15:73516400-73518800	Strong transcription	Fetal Intestine Large	intestine
9	chr15:73516400-73523800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr15:73516400-73524000	Weak transcription	Fetal Brain Male	brain
11	chr15:73516600-73528200	Weak transcription	Duodenum Mucosa	Duodenum
12	chr15:73516800-73528600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr15:73517000-73519800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr15:73517200-73518800	Enhancers	H1 Cell Line	embryonic stem cell
15	chr15:73517200-73519000	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr15:73517400-73518800	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr15:73517400-73518800	Strong transcription	Fetal Intestine Small	intestine
18	chr15:73517400-73519200	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr15:73517600-73518800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr15:73517600-73518800	Enhancers	Psoas Muscle	Psoas
21	chr15:73517600-73519000	Enhancers	Brain Hippocampus Middle	brain
22	chr15:73517600-73520000	Weak transcription	Colon Smooth Muscle	Colon
23	chr15:73517600-73523800	Weak transcription	Brain Cingulate Gyrus	brain
24	chr15:73517600-73528400	Weak transcription	Fetal Lung	lung
25	chr15:73517800-73518800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr15:73517800-73518800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr15:73517800-73518800	Strong transcription	Fetal Stomach	stomach
28	chr15:73517800-73521600	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr15:73518000-73518800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr15:73518000-73518800	Enhancers	H9 Cell Line	embryonic stem cell
31	chr15:73518000-73518800	Enhancers	Brain Anterior Caudate	brain
32	chr15:73518000-73519000	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr15:73518000-73519000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr15:73518000-73519000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr15:73518000-73520800	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr15:73518000-73523800	Weak transcription	Gastric	stomach
37	chr15:73518200-73519000	Flanking Active TSS	Osteobl	bone
38	chr15:73518200-73519400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr15:73518200-73522800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr15:73518200-73528600	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr15:73518200-73540800	Weak transcription	Colonic Mucosa	Colon
42	chr15:73518400-73518800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr15:73518400-73519000	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr15:73518400-73519400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr15:73518400-73531800	Weak transcription	Aorta	Aorta
46	chr15:73518600-73519000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr15:73518600-73519800	Weak transcription	Stomach Mucosa	stomach
48	chr15:73518600-73520000	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr15:73518600-73520000	Weak transcription	Brain Substantia Nigra	brain
50	chr15:73518600-73524800	Weak transcription	Lung	lung

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