Variant report

Variant	rs62015484
Chromosome Location	chr15:73587174-73587175
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73580564..73583381-chr15:73583937..73588117,3	K562	blood:
2	chr15:73581356..73583463-chr15:73586460..73588117,2	K562	blood:
3	chr15:73586710..73589263-chr15:73924586..73926850,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156642	Chromatin interaction
ENSG00000067141	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1116880	0.89[EUR][1000 genomes]
rs11634084	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11634147	0.92[EUR][1000 genomes]
rs12050658	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12050685	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12050774	0.85[EUR][1000 genomes]
rs1479338	0.85[EUR][1000 genomes]
rs1479339	0.85[EUR][1000 genomes]
rs17762146	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17762516	0.83[EUR][1000 genomes]
rs17762600	0.85[EUR][1000 genomes]
rs17829830	0.85[EUR][1000 genomes]
rs17829957	0.84[EUR][1000 genomes]
rs1812835	0.86[EUR][1000 genomes]
rs2415148	0.89[EUR][1000 genomes]
rs3784801	0.92[EUR][1000 genomes]
rs3985587	0.92[EUR][1000 genomes]
rs4777598	0.92[EUR][1000 genomes]
rs546564	0.82[EUR][1000 genomes]
rs55646651	0.85[EUR][1000 genomes]
rs55853625	0.92[EUR][1000 genomes]
rs55868723	0.89[EUR][1000 genomes]
rs55939596	0.86[EUR][1000 genomes]
rs56118677	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56215298	0.86[EUR][1000 genomes]
rs56348595	0.86[EUR][1000 genomes]
rs59066156	0.81[EUR][1000 genomes]
rs62015460	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62015499	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62015500	0.98[EUR][1000 genomes]
rs62015502	0.97[EUR][1000 genomes]
rs62015504	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62016850	0.82[ASN][1000 genomes]
rs62016853	0.85[EUR][1000 genomes]
rs62016854	0.83[EUR][1000 genomes]
rs62016856	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62016857	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62016858	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62017774	0.86[EUR][1000 genomes]
rs62017776	0.86[EUR][1000 genomes]
rs74022925	0.86[EUR][1000 genomes]
rs74025262	0.85[EUR][1000 genomes]
rs7497992	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9806496	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73535200-73588000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:73536200-73602000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr15:73538000-73593400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr15:73546800-73588600	Weak transcription	Spleen	Spleen
5	chr15:73552400-73588200	Weak transcription	Hela-S3	cervix
6	chr15:73552800-73598400	Weak transcription	Small Intestine	intestine
7	chr15:73560800-73597200	Strong transcription	Rectal Mucosa Donor 31	rectum
8	chr15:73563200-73598600	Weak transcription	Stomach Mucosa	stomach
9	chr15:73563600-73593600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr15:73566400-73597800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:73568600-73600800	Strong transcription	Rectal Mucosa Donor 29	rectum
12	chr15:73570200-73597000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr15:73570400-73597000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:73571200-73601400	Strong transcription	Fetal Stomach	stomach
15	chr15:73572400-73587600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr15:73574000-73596800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr15:73574800-73588000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr15:73576200-73587600	Weak transcription	Right Ventricle	heart
19	chr15:73576400-73594600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr15:73577800-73598200	Strong transcription	Duodenum Mucosa	Duodenum
21	chr15:73578200-73590600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr15:73579000-73590400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr15:73579200-73598200	Weak transcription	Psoas Muscle	Psoas
24	chr15:73579800-73591400	Strong transcription	Rectal Smooth Muscle	rectum
25	chr15:73580000-73587200	Weak transcription	Colonic Mucosa	Colon
26	chr15:73580400-73594400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr15:73581600-73598000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr15:73581800-73588000	Weak transcription	HMEC	breast
29	chr15:73582000-73587600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr15:73582000-73588200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr15:73582000-73589400	Weak transcription	Fetal Brain Male	brain
32	chr15:73582000-73590400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr15:73582000-73590600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr15:73582000-73595200	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr15:73582000-73598000	Weak transcription	Fetal Heart	heart
36	chr15:73582200-73589400	Weak transcription	Colon Smooth Muscle	Colon
37	chr15:73582200-73590600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr15:73582200-73590800	Weak transcription	A549	lung
39	chr15:73582600-73590800	Weak transcription	Fetal Kidney	kidney
40	chr15:73582800-73596800	Strong transcription	Fetal Lung	lung
41	chr15:73583400-73587600	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr15:73583400-73587600	Weak transcription	Adipose Nuclei	Adipose
43	chr15:73583400-73588400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr15:73583400-73589000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr15:73583400-73590800	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr15:73583400-73597000	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr15:73583400-73598400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr15:73583600-73587200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr15:73583600-73590600	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr15:73583600-73590800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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