Variant report

Variant	rs62015502
Chromosome Location	chr15:73616744-73616745
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73567230..73569209-chr15:73616607..73619389,2	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1023924	0.81[AMR][1000 genomes]
rs10438294	0.82[ASN][1000 genomes]
rs1116880	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11634084	0.98[EUR][1000 genomes]
rs11634147	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12050658	0.82[EUR][1000 genomes]
rs12050685	0.82[EUR][1000 genomes]
rs12050774	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1479338	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1479339	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1479340	0.85[AMR][1000 genomes]
rs1564345	0.83[AMR][1000 genomes]
rs17762516	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17762600	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17829830	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17829836	0.85[AMR][1000 genomes]
rs17829957	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1812835	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2127277	0.85[AMR][1000 genomes]
rs2415148	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2899784	0.85[AMR][1000 genomes]
rs3743489	0.82[ASN][1000 genomes]
rs3784801	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3985587	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3985588	0.89[AMR][1000 genomes]
rs4545783	0.82[AMR][1000 genomes]
rs4777598	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs546564	0.83[EUR][1000 genomes]
rs55646651	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55853625	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55868723	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55939596	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56118677	0.88[EUR][1000 genomes]
rs56215298	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56348595	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58060856	0.85[AMR][1000 genomes]
rs59066156	0.85[AMR][1000 genomes]
rs62015460	0.89[EUR][1000 genomes]
rs62015484	0.97[EUR][1000 genomes]
rs62015499	0.97[EUR][1000 genomes]
rs62015500	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62015504	0.98[EUR][1000 genomes]
rs62016849	0.82[AMR][1000 genomes]
rs62016851	0.88[AMR][1000 genomes]
rs62016853	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62016854	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62016856	0.87[EUR][1000 genomes]
rs62016857	0.82[EUR][1000 genomes]
rs62016858	0.87[EUR][1000 genomes]
rs62017774	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62017776	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7169083	0.83[AMR][1000 genomes]
rs7172021	0.85[AMR][1000 genomes]
rs7172396	0.85[AMR][1000 genomes]
rs74022925	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs74025262	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7497992	0.82[EUR][1000 genomes]
rs8040516	0.82[ASN][1000 genomes]
rs9806496	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv457202	chr15:73612377-73680301	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv569949	chr15:73612377-73680301	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv524049	chr15:73612833-73680301	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73596800-73616800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr15:73598200-73622800	Weak transcription	Right Atrium	heart
3	chr15:73598800-73620000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr15:73601000-73617800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr15:73611000-73620200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr15:73611400-73622200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:73612000-73617400	Weak transcription	Fetal Heart	heart
8	chr15:73612000-73618000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:73612000-73620200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr15:73612200-73623200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr15:73612400-73618400	Weak transcription	Brain Germinal Matrix	brain
12	chr15:73612400-73620200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr15:73612400-73623000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr15:73612600-73617200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr15:73614000-73618600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr15:73614800-73618000	Weak transcription	Left Ventricle	heart
17	chr15:73614800-73618600	Strong transcription	Fetal Brain Female	brain
18	chr15:73615000-73617400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr15:73615000-73618200	Strong transcription	iPS-15b Cell Line	embryonic stem cell
20	chr15:73615000-73622800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr15:73615200-73617400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr15:73615400-73617600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr15:73615400-73618200	Strong transcription	H1 Cell Line	embryonic stem cell
24	chr15:73615600-73617200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr15:73615800-73618000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr15:73616200-73618200	Weak transcription	Right Ventricle	heart
27	chr15:73616400-73617000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr15:73616600-73617200	ZNF genes & repeats	Fetal Intestine Small	intestine
29	chr15:73616600-73617400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links